BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0116900 Os10g0116900|AK121038
(595 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0116900 Conserved hypothetical protein 881 0.0
Os03g0238800 Conserved hypothetical protein 387 e-107
Os06g0138200 2OG-Fe(II) oxygenase domain containing protein 126 6e-29
>Os10g0116900 Conserved hypothetical protein
Length = 595
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/568 (80%), Positives = 460/568 (80%)
Query: 28 DGRDGLVAWLRGEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRRHHWAPVLHLQHY 87
DGRDGLVAWLRGEF QRRRHHWAPVLHLQHY
Sbjct: 28 DGRDGLVAWLRGEFAAANAIIDLLLAHARDAADPAGFDAVAAAVQRRRHHWAPVLHLQHY 87
Query: 88 FPVTEVALALHHAAARQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKEVETSAEATQNS 147
FPVTEVALALHHAAARQG VKEVETSAEATQNS
Sbjct: 88 FPVTEVALALHHAAARQGPPPPPPPPRPPSGSAGAEGDDAAIASGGVKEVETSAEATQNS 147
Query: 148 QLVSHISHATEAQPQKGLHVISNVVPVPTCFVVNEVIDGRMVNVLEGLKLYKGYVDLTEI 207
QLVSHISHATEAQPQKGLHVISNVVPVPTCFVVNEVIDGRMVNVLEGLKLYKGYVDLTEI
Sbjct: 148 QLVSHISHATEAQPQKGLHVISNVVPVPTCFVVNEVIDGRMVNVLEGLKLYKGYVDLTEI 207
Query: 208 GKVLSFVNEAKTMRRKPGLEGQTVVVAKRPMKGHGREIIQLGLPITEGPPEDEHLREVKV 267
GKVLSFVNEAKTMRRKPGLEGQTVVVAKRPMKGHGREIIQLGLPITEGPPEDEHLREVKV
Sbjct: 208 GKVLSFVNEAKTMRRKPGLEGQTVVVAKRPMKGHGREIIQLGLPITEGPPEDEHLREVKV 267
Query: 268 DPIPGVLQNLFDSLVHQKVVPSSPDYCVIDIFNEGDYSHPHHHPPWYGRPICTLCLTDCD 327
DPIPGVLQNLFDSLVHQKVVPSSPDYCVIDIFNEGDYSHPHHHPPWYGRPICTLCLTDCD
Sbjct: 268 DPIPGVLQNLFDSLVHQKVVPSSPDYCVIDIFNEGDYSHPHHHPPWYGRPICTLCLTDCD 327
Query: 328 MVFGHVIAADSRGDHAGPLKLSLSTGSVLVFEGKSADIAKRALPATSKQRILLSFGKSVS 387
MVFGHVIAADSRGDHAGPLKLSLSTGSVLVFEGKSADIAKRALPATSKQRILLSFGKSVS
Sbjct: 328 MVFGHVIAADSRGDHAGPLKLSLSTGSVLVFEGKSADIAKRALPATSKQRILLSFGKSVS 387
Query: 388 RKHVQSESSXXXXXXXXXXXXXXXXXXXXGNIAIHPSSPKQLVYNPSNRVPAVSTPGLHH 447
RKHVQSESS GNIAIHPSSPKQLVYNPSNRVPAVSTPGLHH
Sbjct: 388 RKHVQSESSLLITPPLTPPPMPWAAPLRPGNIAIHPSSPKQLVYNPSNRVPAVSTPGLHH 447
Query: 448 IPSNGIQTVFVAPLPITPKAVPFASAVTLPNSTXXXXXXXXXXXXXXXXXXQGTGVFLPP 507
IPSNGIQTVFVAPLPITPKAVPFASAVTLPNST QGTGVFLPP
Sbjct: 448 IPSNGIQTVFVAPLPITPKAVPFASAVTLPNSTAAWIAEAAPRPASPRLPLQGTGVFLPP 507
Query: 508 GSGNPPPAQKLGVKHADAKPFFPQEXXXXXXXXXXXXHKANGSVSSKPTRKDDMAEAKPK 567
GSGNPPPAQKLGVKHADAKPFFPQE HKANGSVSSKPTRKDDMAEAKPK
Sbjct: 508 GSGNPPPAQKLGVKHADAKPFFPQESSASSSGVSARAHKANGSVSSKPTRKDDMAEAKPK 567
Query: 568 CNGSSDGGSSVAHAKATGGLEEQNVVAK 595
CNGSSDGGSSVAHAKATGGLEEQNVVAK
Sbjct: 568 CNGSSDGGSSVAHAKATGGLEEQNVVAK 595
>Os03g0238800 Conserved hypothetical protein
Length = 563
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 258/387 (66%), Gaps = 7/387 (1%)
Query: 134 VKEVETSAEATQNSQLVSHISHATEA--QPQKGLHVISNVVPVPTCFVVNEVIDGRMVNV 191
+KE E EA ++SQL S +SH E +PQ S VVP P + VN++IDG+ VN
Sbjct: 179 MKEAENVVEA-KSSQLESLVSHEGEKTPRPQAVAEGSSKVVPTPVEYTVNDIIDGKTVNA 237
Query: 192 LEGLKLYKGYVDLTEIGKVLSFVNEAKTMRRKPGLE-GQTVVVAKRPMKGHGREIIQLGL 250
+EGLK+Y+G V+ E K+LS +NE K R+ GLE GQTV++ KRPMKGHGREIIQLG+
Sbjct: 238 VEGLKVYEGLVNENEKNKILSLLNETKASFRRGGLEAGQTVIIGKRPMKGHGREIIQLGI 297
Query: 251 PITEGPPEDEHLREVKVDPIPGVLQNLFDSLVHQKVVPSSPDYCVIDIFNEGDYSHPHHH 310
PI EGPPED++ RE KV+ +PG+L +LFD L ++++P+ PDYCVID +NEGDYSHPH
Sbjct: 298 PIVEGPPEDDYPRETKVEAVPGLLHDLFDRLCQKEIIPTKPDYCVIDYYNEGDYSHPHQS 357
Query: 311 PPWYGRPICTLCLTDCDMVFGHVIAADSRGDHAGPLKLSLSTGSVLVFEGKSADIAKRAL 370
PPWYGRP CT CLTDCDMVFG VI+ + RGDH GPLKLSLSTGS+LV GKSAD+AKRA+
Sbjct: 358 PPWYGRPFCTFCLTDCDMVFGRVISGE-RGDHRGPLKLSLSTGSLLVLHGKSADVAKRAI 416
Query: 371 PATSKQRILLSFGKSVSRKHVQSESSXXXXXXXXXXXXXXXXXXXXGNIAIHPSSPKQLV 430
PA KQRILLSFGKS+SRK V SE S N+A H SSPK
Sbjct: 417 PAACKQRILLSFGKSLSRKQVPSE-SVSRFTTPLTPPPMPWGPPRPANMARHSSSPKHFG 475
Query: 431 YNPSNRVPAVSTPGLHHI-PSNGIQTVFVAPLPITPKAVPFASAVTLPNSTXXXXXXXXX 489
Y P++ V G HHI PS+G+Q +FVAP P+ A+PF S V LPNST
Sbjct: 476 YAPNSGVLPAPAIGAHHIPPSDGMQPLFVAPAPVAAAAMPFPSPVPLPNSTTAWMAEAAP 535
Query: 490 XXXXXXXXXQGTGVFLPPGSGNPPPAQ 516
GTGVFLPPGSG+ P Q
Sbjct: 536 RSAPQRLPVPGTGVFLPPGSGHALPHQ 562
>Os06g0138200 2OG-Fe(II) oxygenase domain containing protein
Length = 616
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)
Query: 162 QKGLHVISNVVPVPTCFVVNEVIDGRMVNVLEGLKLYKGYVDLTEIGKVLSFVNEAKTMR 221
Q+ L NVV F+ E ++GR+VN+L GL+L+ G E +++ +V + + M
Sbjct: 173 QRELRRFRNVVRRKD-FICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDLQEMG 231
Query: 222 RKPGLEGQTVVVAKRPMKGHGREIIQLGLPITEGPPEDEH----LREVKVDPIPGVLQNL 277
+ L +T +R M+G GR IQ G ++ + +R + DP+P + + +
Sbjct: 232 KHGELGDRTYTEPQRWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSLFKIM 291
Query: 278 FDSLVHQKVVPSS--PDYCVIDIFNEGDYSHPHHHPPWYGRPICTLC-LTDCDMVFGHVI 334
LV V+P + PD C+++I++ GD PH + RP CT+ L++C+++FG +
Sbjct: 292 IKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILFGSTL 351
Query: 335 AADSRGDHAGPLKLSLSTGSVLVFEGKSADIAKRALPATSKQRILLSFGK 384
G+ G L + L GSVL+ G AD+AK +PA +RI ++F K
Sbjct: 352 KIAGPGEFTGSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRK 401
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,045,330
Number of extensions: 725693
Number of successful extensions: 1725
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1713
Number of HSP's successfully gapped: 3
Length of query: 595
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 489
Effective length of database: 11,501,117
Effective search space: 5624046213
Effective search space used: 5624046213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)