Os06g0138200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os06g0138200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.71 | 0.238 | 10 | 0.371 | 0.00561 | 0.279 | -0.712 | -0.0564 | 0.0595 | 8.88 | 20.02 | 88 | -- | -- |
| 25.72 | 0.236 | 10 | 0.38 | 0.00729 | 0.284 | -0.714 | -- | 0.0614 | 9.02 | 20 | 90 | -- | -- |
| 26.63 | 0.242 | 10 | 0.321 | 0.0517 | 0.319 | -- | -0.146 | 0.0602 | 15.7 | 19.1 | 49 | -- | -- |
| 26.71 | 0.242 | 10 | 0.335 | 0.0502 | 0.339 | -- | -- | 0.0637 | 15.7 | 19.1 | 49 | -- | -- |
| 26.77 | 0.242 | 10 | 0.315 | -- | 0.334 | -- | -0.138 | 0.0571 | -- | 19.1 | 49 | -- | -- |
| 28.77 | 0.251 | 10 | 0.458 | 0.043 | -- | -0.724 | -- | 0.11 | 9.38 | -- | -- | -- | -- |
| 30.09 | 0.257 | 10 | 0.436 | 0.109 | -- | -- | -- | 0.112 | 14.1 | -- | -- | -- | -- |
| 26.84 | 0.242 | 10 | 0.329 | -- | 0.353 | -- | -- | 0.0605 | -- | 19.1 | 49 | -- | -- |
| 29.46 | 0.254 | 10.1 | -- | 0.0344 | 0.422 | -- | -- | 0.0174 | 17.1 | 19.16 | 57 | -- | -- |
| 30.8 | 0.259 | 10 | 0.432 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 35.1 | 0.277 | 10 | -- | 0.1 | -- | -- | -- | 0.0634 | 14 | -- | -- | -- | -- |
| 29.52 | 0.254 | 10.1 | -- | -- | 0.427 | -- | -- | 0.0161 | -- | 19.16 | 57 | -- | -- |
| 35.71 | 0.279 | 10 | -- | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.83 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 7 | 24.42 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 8 | 24.43 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 10 |
| 14 | 24.50 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 16 |
| 41 | 24.66 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |
| 49 | 24.73 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 11 |
| 50 | 24.74 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 13 |
| 57 | 24.78 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 66 | 24.80 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 15 |
| 91 | 24.86 | temperature | 20 | 270 | < th | dose independent | sin | 15 | NA |
| 134 | 24.97 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 172 | 25.07 | temperature | 20 | 270 | > th | dose independent | sin | 17 | NA |
| 174 | 25.07 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 6 |
| 236 | 25.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 13 |
| 243 | 25.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 308 | 25.30 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 17 |
| 319 | 25.32 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 14 |
| 404 | 25.44 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 17 |
| 430 | 25.46 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |
| 434 | 25.47 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 2 |
| 451 | 25.48 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 558 | 25.58 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 575 | 25.59 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 576 | 25.59 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |
| 685 | 25.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 699 | 25.68 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 22 |
| 737 | 25.71 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 738 | 25.71 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 14 | 17 |
| 758 | 25.72 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 771 | 25.72 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 783 | 25.73 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 799 | 25.74 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 857 | 25.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 886 | 25.78 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 897 | 25.78 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 911 | 25.79 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 917 | 25.79 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 983 | 25.81 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 997 | 25.82 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |