BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0138200 Os06g0138200|AK073705
(616 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36090.3 | chr4:17078376-17080670 REVERSE LENGTH=521 398 e-111
AT2G17970.1 | chr2:7819116-7821276 REVERSE LENGTH=508 395 e-110
AT1G48980.1 | chr1:18118715-18120511 FORWARD LENGTH=332 338 5e-93
AT2G48080.1 | chr2:19665192-19667092 REVERSE LENGTH=439 127 3e-29
AT1G14710.1 | chr1:5062168-5064697 REVERSE LENGTH=602 123 3e-28
AT4G02940.1 | chr4:1306658-1310699 FORWARD LENGTH=570 120 3e-27
>AT4G36090.3 | chr4:17078376-17080670 REVERSE LENGTH=521
Length = 520
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 182/256 (71%), Positives = 209/256 (81%)
Query: 168 QLTREQXXXXXXXXXXXXKDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDL 227
+L+RE+ K F C+E+V GR VNIL GLELH GVFSA EQK+IVD+VY+L
Sbjct: 183 KLSREERERYRFMNVKKMKVFSCYEKVRGRSVNILEGLELHTGVFSAVEQKKIVDFVYEL 242
Query: 228 QEMGKHGELGDRTYTEPQRWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSL 287
QE G+ GEL +RT+T P +WMRGKGRVTIQFGCCYNYA DK GNPPGI++ DPMPS+
Sbjct: 243 QEKGRRGELRERTFTAPHKWMRGKGRVTIQFGCCYNYAPDKAGNPPGILQRGDVDPMPSI 302
Query: 288 FKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILF 347
FK++IKRLV WHVLP TC+PDSCIVNIY+ DCIPPHID+HDF+RPFCTVSFLSECNILF
Sbjct: 303 FKVIIKRLVGWHVLPPTCVPDSCIVNIYEEDDCIPPHIDNHDFLRPFCTVSFLSECNILF 362
Query: 348 GSTLKIAGPGEFTGSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDPAKR 407
GS LK+ GPGEF+GS IPLPVGSVL+L GNGADVAKHCVPAVPTKRISITFRKMD +KR
Sbjct: 363 GSNLKVLGPGEFSGSYSIPLPVGSVLVLKGNGADVAKHCVPAVPTKRISITFRKMDESKR 422
Query: 408 PFNFRDDPELLNIIPL 423
P F +P+L I PL
Sbjct: 423 PVGFTPEPDLEEIKPL 438
>AT2G17970.1 | chr2:7819116-7821276 REVERSE LENGTH=508
Length = 507
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 214/267 (80%)
Query: 168 QLTREQXXXXXXXXXXXXKDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDL 227
+L+R+Q KDFIC ERV G++VN+L GLELH GVFSA EQKRIVD VY L
Sbjct: 179 KLSRDQRENLRLINVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQL 238
Query: 228 QEMGKHGELGDRTYTEPQRWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSL 287
QE G+ GEL RT+T P +WMRGKGR TIQFGCCYNYA D+ GNPPGI++ DP+P L
Sbjct: 239 QEKGRRGELKKRTFTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHL 298
Query: 288 FKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILF 347
FK++I++L++WHVLP TC+PDSCIVNIYD GDCIPPHID+HDF+RPFCT+SFLSEC+ILF
Sbjct: 299 FKVIIRKLIKWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILF 358
Query: 348 GSTLKIAGPGEFTGSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDPAKR 407
GS LK+ GPG+F+GS IPLPVGSVL+LNGNGADVAKHCVPAVPTKRISITFRKMD +KR
Sbjct: 359 GSNLKVEGPGDFSGSYSIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDESKR 418
Query: 408 PFNFRDDPELLNIIPLETAVQETGRSS 434
P F +P+L I PL + +G +S
Sbjct: 419 PVWFTPEPDLQGIEPLPLDLNRSGSTS 445
>AT1G48980.1 | chr1:18118715-18120511 FORWARD LENGTH=332
Length = 331
Score = 338 bits (867), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 164/267 (61%), Positives = 197/267 (73%), Gaps = 7/267 (2%)
Query: 168 QLTREQXXXXXXXXXXXXKDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDL 227
+L+R+Q +DF+C E+VNG LVNIL GLELH VF+AAEQ+RIVD V +L
Sbjct: 67 KLSRKQRTHIRAINVKRKRDFVCLEKVNGELVNILEGLELHTEVFNAAEQRRIVDKVCEL 126
Query: 228 QEMGKHGELGDRTYTEPQRWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSL 287
QE + GEL R +T +GKGR TIQFGCC+NY T K GN GI++ DP+P L
Sbjct: 127 QEKVQKGEL-KRAFT-----AQGKGRSTIQFGCCFNYRTSKTGNLAGILKHETVDPLPHL 180
Query: 288 FKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILF 347
FK++I+RLV+WHVLP TC+PD C+VNIYD GDCIPPHID HDF+RPFCTVSFLSECNILF
Sbjct: 181 FKVIIRRLVKWHVLPPTCVPDCCVVNIYDEGDCIPPHIDHHDFLRPFCTVSFLSECNILF 240
Query: 348 GSTLKIAGPGEFT-GSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDPAK 406
GS LK+ GE++ GS +PLPVGSVL+LNGNGADVAKHCVP VPTKRISITFRKMD +K
Sbjct: 241 GSNLKVEETGEYSGGSYSLPLPVGSVLVLNGNGADVAKHCVPEVPTKRISITFRKMDESK 300
Query: 407 RPFNFRDDPELLNIIPLETAVQETGRS 433
P + +P L I PL ++ G S
Sbjct: 301 WPVWYTPEPYLQGIQPLTYELKSCGSS 327
>AT2G48080.1 | chr2:19665192-19667092 REVERSE LENGTH=439
Length = 438
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 22/225 (9%)
Query: 186 KDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDLQEMGKHGELGDRTYTEPQ 245
K F E V G N++ GL+L+ VF+ + +++D + L+E G++ +L T+
Sbjct: 149 KRFSAKEHVRGHTANVVKGLKLYQDVFTRPQLSKLLDSINQLREAGRNHQLSGETFVLFN 208
Query: 246 RWMRGKGRVTIQFGC-CYNYATDKNGNPPGIIRTIASDPMPSLFKIMIKRLVRWHVLPKT 304
+ +G R +Q G + TD++ + +P+P+L + +I L++W ++P+
Sbjct: 209 KNTKGTKRELLQLGVPIFGNTTDEH----------SVEPIPTLVQSVIDHLLQWRLIPEY 258
Query: 305 CIPDSCIVNIYDPGDCI-----PPHIDSHDFVRPFCTVSFLSECNILFGSTLKIAGPGEF 359
P+ C++N +D + PPH+D +P T+ LSE ++FG L + G F
Sbjct: 259 KRPNGCVINFFDEDEHSQPFQKPPHVD-----QPISTL-VLSESTMVFGHRLGVDNDGNF 312
Query: 360 TGSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDP 404
GSL +PL GS+L++ GN AD+A+H + P KR++ITF K+ P
Sbjct: 313 RGSLTLPLKEGSLLVMRGNSADMARHVMCPSPNKRVAITFFKLKP 357
>AT1G14710.1 | chr1:5062168-5064697 REVERSE LENGTH=602
Length = 601
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 186 KDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDLQEMGKHGELGDRTYTEPQ 245
K F+ E + ++VN++ GL+L+ + A E ++V V +L+ G+ G+L Y +
Sbjct: 242 KTFVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAGRRGQLQSEAYVGYK 301
Query: 246 RWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSLFKIMIKRLVRWHVLPKTC 305
R RG GR IQ G + + I+ +P+PS +I+RLV ++P
Sbjct: 302 RPNRGHGREMIQLGLPIADTPPDDDS----IKDRRIEPIPSALSDIIERLVSKQIIP--V 355
Query: 306 IPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILFGSTLKIAGPGEFTGSLPI 365
PD+CI++ + GD PH+ F RP +S LSEC+ FG + PG++ GSL +
Sbjct: 356 KPDACIIDFFSEGDHSQPHMFVPWFGRPISVLS-LSECDYTFGRVIVSENPGDYKGSLKL 414
Query: 366 PLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDP 404
L GSVL++ G A++AK+ + A +RI I+F K P
Sbjct: 415 SLTPGSVLLVEGKSANLAKYAIHATRKQRILISFIKSKP 453
>AT4G02940.1 | chr4:1306658-1310699 FORWARD LENGTH=570
Length = 569
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 5/221 (2%)
Query: 186 KDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDLQEMGKHGELGDRTYTEPQ 245
K F E+V G VN++ GL+L+ + E +++D+V +L+E G +G+L ++
Sbjct: 223 KGFQAKEQVKGHTVNVVKGLKLYEELLKEDEISKLLDFVAELREAGINGKLAGESFILFN 282
Query: 246 RWMRGKGRVTIQFGCCY--NYATDKNGNPPGIIRTIASDPMPSLFKIMIKRLVRWHVLPK 303
+ ++G R IQ G + D+N N ++ +P+P L + +I V W ++P+
Sbjct: 283 KQIKGNKRELIQLGVPIFGHVKADENSNDTN--NSVNIEPIPPLLESVIDHFVTWRLIPE 340
Query: 304 TCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILFGSTLKIAGPGEFTGSL 363
P+ C++N ++ G+ P + +P T+ LSE + +G L G F G L
Sbjct: 341 YKRPNGCVINFFEEGEYSQPFLKPPHLEQPISTL-VLSESTMAYGRILSSDNEGNFRGPL 399
Query: 364 PIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDP 404
+ L GS+L++ GN AD+A+H + KR+SITF ++ P
Sbjct: 400 TLSLKQGSLLVMRGNSADMARHVMCPSQNKRVSITFFRIRP 440
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,546,306
Number of extensions: 464955
Number of successful extensions: 958
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 6
Length of query: 616
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 512
Effective length of database: 8,255,305
Effective search space: 4226716160
Effective search space used: 4226716160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)