Os03g0238800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0238800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.1 | 0.566 | 6.01 | 0.684 | 2.23 | -2.46 | 0.65 | 10.6 | -0.393 | 9.69 | 26.5 | 4714 | -- | -- |
| 160.3 | 0.59 | 6.21 | 0.0934 | 2.32 | -3.13 | 0.817 | -- | -0.348 | 9.44 | 19 | 22872 | -- | -- |
| 145 | 0.561 | 6.01 | 0.782 | 2.23 | -2.55 | -- | 11.2 | -0.44 | 9.73 | 26.9 | 4680 | -- | -- |
| 160.55 | 0.59 | 6.19 | 0.508 | 2.29 | -3.36 | -- | -- | -0.256 | 9.5 | 18.99 | 24348 | -- | -- |
| 411.97 | 0.945 | 6.05 | 0.919 | -- | -3.01 | -- | 11.5 | -0.302 | -- | 26.4 | 3669 | -- | -- |
| 298.44 | 0.81 | 6.45 | -2.84 | 2.32 | -- | 0.71 | -- | -1.39 | 9.59 | -- | -- | -- | -- |
| 300.32 | 0.812 | 6.45 | -2.81 | 2.32 | -- | -- | -- | -1.39 | 9.59 | -- | -- | -- | -- |
| 466.44 | 1.01 | 6.25 | 0.537 | -- | -3.33 | -- | -- | -0.253 | -- | 18.93 | 25324 | -- | -- |
| 162.09 | 0.593 | 6.22 | -- | 2.3 | -3.11 | -- | -- | -0.394 | 9.5 | 18.9 | 23074 | -- | -- |
| 617.72 | 1.16 | 6.51 | -2.83 | -- | -- | -- | -- | -1.39 | -- | -- | -- | -- | -- |
| 508.41 | 1.05 | 6.38 | -- | 2.32 | -- | -- | -- | -1.08 | 9.68 | -- | -- | -- | -- |
| 465.14 | 1 | 6.27 | -- | -- | -3.21 | -- | -- | -0.37 | -- | 19 | 22481 | -- | -- |
| 828.69 | 1.34 | 6.44 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 10 | 139.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 16 | 140.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 32 | 140.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 57 | 142.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 61 | 142.37 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 71 | 142.71 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 80 | 143.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 93 | 143.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 124 | 144.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 190 | 146.57 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 195 | 146.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 198 | 146.71 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 201 | 146.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 209 | 146.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 233 | 147.15 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 234 | 147.16 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 292 | 147.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 316 | 147.83 | temperature | 15 | 43200 | > th | dose independent | sin | 11 | NA |
| 356 | 148.07 | temperature | 15 | 43200 | < th | dose independent | sin | 10 | NA |
| 370 | 148.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 373 | 148.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 374 | 148.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 376 | 148.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 381 | 148.19 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 403 | 148.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 491 | 148.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 548 | 148.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 555 | 148.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 616 | 149.16 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 621 | 149.16 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 622 | 149.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 629 | 149.18 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 633 | 149.19 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 699 | 149.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 12 |
| 730 | 149.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 762 | 149.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 769 | 149.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 787 | 149.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 852 | 149.90 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 925 | 150.17 | temperature | 25 | 4320 | > th | dose independent | sin | 2 | NA |
| 957 | 150.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |