BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0238800 Os03g0238800|AY224467
(563 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14710.1 | chr1:5062168-5064697 REVERSE LENGTH=602 238 9e-63
AT4G02940.1 | chr4:1306658-1310699 FORWARD LENGTH=570 149 4e-36
AT2G48080.1 | chr2:19665192-19667092 REVERSE LENGTH=439 132 5e-31
AT2G17970.1 | chr2:7819116-7821276 REVERSE LENGTH=508 114 2e-25
AT4G36090.3 | chr4:17078376-17080670 REVERSE LENGTH=521 104 1e-22
AT1G48980.1 | chr1:18118715-18120511 FORWARD LENGTH=332 96 4e-20
>AT1G14710.1 | chr1:5062168-5064697 REVERSE LENGTH=602
Length = 601
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 228/419 (54%), Gaps = 50/419 (11%)
Query: 160 ATAGSDKDGRE---VHNKEEKGMKEAENVVEA-------KSSQLESLVSHEGEKTPRPQA 209
+ A +DG E +K EK ++E+E E S+ SL+S + +
Sbjct: 177 SVAEEKRDGSEKPRSDSKVEKKLEESETQEEIVKNHKCNSGSKDNSLISEQKQ------- 229
Query: 210 VAEGSSKVVPTPV--EYTVNDIIDGKTVNAVEGLKVYEGLVNENEKNKILSLLNETKASF 267
E + K P + + V ++ D K VN VEGLK+Y+ +++ NE ++++SL+ + +
Sbjct: 230 --EENDKECPASMAKTFVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAG 287
Query: 268 RRGGLEAGQTVIIGKRPMKGHGREIIQLGIPIVEGPPEDDYPRETKVEAVPGLLHDLFDR 327
RRG L++ + + KRP +GHGRE+IQLG+PI + PP+DD ++ ++E +P L D+ +R
Sbjct: 288 RRGQLQS-EAYVGYKRPNRGHGREMIQLGLPIADTPPDDDSIKDRRIEPIPSALSDIIER 346
Query: 328 LCQKEIIPTKPDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFCLTDCDMVFGRVISGER-G 386
L K+IIP KPD C+ID+++EGD+S PH PW+GRP L++CD FGRVI E G
Sbjct: 347 LVSKQIIPVKPDACIIDFFSEGDHSQPHMFVPWFGRPISVLSLSECDYTFGRVIVSENPG 406
Query: 387 DHRGPLKLSLSTGSLLVLHGKSADVAKRAIPAACKQRILLSFGKSLSRKQVPSESVSRFX 446
D++G LKLSL+ GS+L++ GKSA++AK AI A KQRIL+SF KS R SR
Sbjct: 407 DYKGSLKLSLTPGSVLLVEGKSANLAKYAIHATRKQRILISFIKSKPRNSNWGPPPSR-- 464
Query: 447 XXXXXXXXXXXXXXXANMARH-SSSPKHFGYA-PNSGVLXXXXXXXXXXXXSDGMQPLFX 504
RH + PKH+ P++GVL + +QP+F
Sbjct: 465 -------------SPNQHIRHPTGPPKHYPVVIPSTGVL----PTPSHRPPNGAVQPIF- 506
Query: 505 XXXXXXXXXXXXXXXXXLPNSTTAW-MAEAAPR--SAPQ-RLPVPGTGVFLPPGSGHAL 559
+P W + PR +APQ R+P+PGTGVFLPPGS L
Sbjct: 507 -IPPSPPLASPMPFPGGVPTGPPVWPLLPPHPRHQTAPQPRMPIPGTGVFLPPGSNQEL 564
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 58/82 (70%)
Query: 26 GWVVDERDGFISWLRGEFAAANAIIDXXXXXXRSVGEPGEFEHVAAAVQQRRHHWAPVIH 85
W+ DERDGFISWLR EFAAANAIID ++VG+ E+E V ++ RR W+ V+
Sbjct: 23 NWIPDERDGFISWLRAEFAAANAIIDSLCQHLQAVGDHNEYESVIGSIHHRRLAWSQVLT 82
Query: 86 MQQFFPVGDVAYALQQAGWRRR 107
MQQFFPV DV+Y LQQ W+R+
Sbjct: 83 MQQFFPVADVSYNLQQIAWKRQ 104
>AT4G02940.1 | chr4:1306658-1310699 FORWARD LENGTH=570
Length = 569
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 8/212 (3%)
Query: 224 YTVNDIIDGKTVNAVEGLKVYEGLVNENEKNKILSLLNETKASFRRGGLEAGQTVIIGKR 283
+ + + G TVN V+GLK+YE L+ E+E +K+L + E + + G L AG++ I+ +
Sbjct: 225 FQAKEQVKGHTVNVVKGLKLYEELLKEDEISKLLDFVAELREAGINGKL-AGESFILFNK 283
Query: 284 PMKGHGREIIQLGIPIVEGPPEDDYPRETK----VEAVPGLLHDLFDRLCQKEIIP--TK 337
+KG+ RE+IQLG+PI D+ +T +E +P LL + D +IP +
Sbjct: 284 QIKGNKRELIQLGVPIFGHVKADENSNDTNNSVNIEPIPPLLESVIDHFVTWRLIPEYKR 343
Query: 338 PDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFCLTDCDMVFGRVISGER-GDHRGPLKLSL 396
P+ CVI+++ EG+YS P PP +P T L++ M +GR++S + G+ RGPL LSL
Sbjct: 344 PNGCVINFFEEGEYSQPFLKPPHLEQPISTLVLSESTMAYGRILSSDNEGNFRGPLTLSL 403
Query: 397 STGSLLVLHGKSADVAKRAIPAACKQRILLSF 428
GSLLV+ G SAD+A+ + + +R+ ++F
Sbjct: 404 KQGSLLVMRGNSADMARHVMCPSQNKRVSITF 435
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 32 RDGFISWLRGEFAAANAIIDXXXXXXRSVGEP---GEFEHVAAAVQQRRHHWAPVIHMQQ 88
+D ISW RGEFAAANAIID R E E+E V AA+ +RR +W PV+ MQ+
Sbjct: 47 KDALISWFRGEFAAANAIIDAMCSHLRIAEEAVSGSEYEAVFAAIHRRRLNWIPVLQMQK 106
Query: 89 FFPVGDVAYALQQAGWRR 106
+ + +VA LQ+ ++
Sbjct: 107 YHSIAEVAIELQKVAAKK 124
>AT2G48080.1 | chr2:19665192-19667092 REVERSE LENGTH=439
Length = 438
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 133/241 (55%), Gaps = 16/241 (6%)
Query: 193 LESLVSHEGEKTPRPQAVAEGSSKVVPTPVEYTVNDIIDGKTVNAVEGLKVYEGLVNENE 252
L HE E R ++ + S + ++ + + G T N V+GLK+Y+ + +
Sbjct: 127 LSICCKHEDECESRGASLLKQSKR-------FSAKEHVRGHTANVVKGLKLYQDVFTRPQ 179
Query: 253 KNKILSLLNETKASFRRGGLEAGQTVIIGKRPMKGHGREIIQLGIPIVEGPPEDDYPRET 312
+K+L +N+ + + R L +G+T ++ + KG RE++QLG+PI G D++
Sbjct: 180 LSKLLDSINQLREAGRNHQL-SGETFVLFNKNTKGTKRELLQLGVPIF-GNTTDEH---- 233
Query: 313 KVEAVPGLLHDLFDRLCQKEIIP--TKPDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFCL 370
VE +P L+ + D L Q +IP +P+ CVI++++E ++S P Q PP +P T L
Sbjct: 234 SVEPIPTLVQSVIDHLLQWRLIPEYKRPNGCVINFFDEDEHSQPFQKPPHVDQPISTLVL 293
Query: 371 TDCDMVFG-RVISGERGDHRGPLKLSLSTGSLLVLHGKSADVAKRAIPAACKQRILLSFG 429
++ MVFG R+ G+ RG L L L GSLLV+ G SAD+A+ + + +R+ ++F
Sbjct: 294 SESTMVFGHRLGVDNDGNFRGSLTLPLKEGSLLVMRGNSADMARHVMCPSPNKRVAITFF 353
Query: 430 K 430
K
Sbjct: 354 K 354
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 32 RDGFISWLRGEFAAANAIIDXXXX-XXRSVGEPGEFEHVAAAVQQRRHHWAPVIHMQQFF 90
+D ++W RGEFAAANAIID ++ G ++E V AA+ +RR +W PV+ MQ++
Sbjct: 23 KDAMLTWFRGEFAAANAIIDALCAHLMQASGGSAQYESVMAALHRRRLNWIPVLQMQKYH 82
Query: 91 PVGDVAYALQQ 101
+ V LQQ
Sbjct: 83 SISQVTLQLQQ 93
>AT2G17970.1 | chr2:7819116-7821276 REVERSE LENGTH=508
Length = 507
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 119/217 (54%), Gaps = 11/217 (5%)
Query: 223 EYTVNDIIDGKTVNAVEGLKVYEGLVNENEKNKILSLLNETKASFRRGGLEAGQTVIIGK 282
++ + + GK VN ++GL+++ G+ + E+ +I+ + + + RRG L+ +T
Sbjct: 198 DFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKK-RTFTAPH 256
Query: 283 RPMKGHGREIIQLGI-----PIVEGPPEDDYPRETKVEAVPGLLHDLFDRLCQKEIIP-- 335
+ M+G GRE IQ G P G P RE +V+ +P L + +L + ++P
Sbjct: 257 KWMRGKGRETIQFGCCYNYAPDRAGNPPGILQRE-EVDPLPHLFKVIIRKLIKWHVLPPT 315
Query: 336 TKPDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFC-LTDCDMVFGRVISGER-GDHRGPLK 393
PD C+++ Y+EGD PH + RPFCT L++CD++FG + E GD G
Sbjct: 316 CVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGDFSGSYS 375
Query: 394 LSLSTGSLLVLHGKSADVAKRAIPAACKQRILLSFGK 430
+ L GS+LVL+G ADVAK +PA +RI ++F K
Sbjct: 376 IPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRK 412
>AT4G36090.3 | chr4:17078376-17080670 REVERSE LENGTH=521
Length = 520
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 224 YTVNDIIDGKTVNAVEGLKVYEGLVNENEKNKILSLLNETKASFRRGGLEAGQTVIIGKR 283
++ + + G++VN +EGL+++ G+ + E+ KI+ + E + RRG L +T +
Sbjct: 203 FSCYEKVRGRSVNILEGLELHTGVFSAVEQKKIVDFVYELQEKGRRGELRE-RTFTAPHK 261
Query: 284 PMKGHGREIIQLGIPIVEGPPEDDYP----RETKVEAVPGLLHDLFDRLCQKEIIP--TK 337
M+G GR IQ G P + P + V+ +P + + RL ++P
Sbjct: 262 WMRGKGRVTIQFGCCYNYAPDKAGNPPGILQRGDVDPMPSIFKVIIKRLVGWHVLPPTCV 321
Query: 338 PDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFC-LTDCDMVFG---RVISGERGDHRGPLK 393
PD C+++ Y E D PH + RPFCT L++C+++FG +V+ G+ G
Sbjct: 322 PDSCIVNIYEEDDCIPPHIDNHDFLRPFCTVSFLSECNILFGSNLKVLGP--GEFSGSYS 379
Query: 394 LSLSTGSLLVLHGKSADVAKRAIPAACKQRILLSFGK 430
+ L GS+LVL G ADVAK +PA +RI ++F K
Sbjct: 380 IPLPVGSVLVLKGNGADVAKHCVPAVPTKRISITFRK 416
>AT1G48980.1 | chr1:18118715-18120511 FORWARD LENGTH=332
Length = 331
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 18/218 (8%)
Query: 223 EYTVNDIIDGKTVNAVEGLKVYEGLVNENEKNKILSLLNETKASFRRGGLEAGQTVIIGK 282
++ + ++G+ VN +EGL+++ + N E+ +I+ + E + ++G L+ T
Sbjct: 86 DFVCLEKVNGELVNILEGLELHTEVFNAAEQRRIVDKVCELQEKVQKGELKRAFTA---- 141
Query: 283 RPMKGHGREIIQLGIPI-----VEGPPEDDYPRETKVEAVPGLLHDLFDRLCQKEIIP-- 335
+G GR IQ G G ET V+ +P L + RL + ++P
Sbjct: 142 ---QGKGRSTIQFGCCFNYRTSKTGNLAGILKHET-VDPLPHLFKVIIRRLVKWHVLPPT 197
Query: 336 TKPDYCVIDYYNEGDYSHPHQSPPWYGRPFCTFC-LTDCDMVFGRVISGER-GDHRG-PL 392
PD CV++ Y+EGD PH + RPFCT L++C+++FG + E G++ G
Sbjct: 198 CVPDCCVVNIYDEGDCIPPHIDHHDFLRPFCTVSFLSECNILFGSNLKVEETGEYSGGSY 257
Query: 393 KLSLSTGSLLVLHGKSADVAKRAIPAACKQRILLSFGK 430
L L GS+LVL+G ADVAK +P +RI ++F K
Sbjct: 258 SLPLPVGSVLVLNGNGADVAKHCVPEVPTKRISITFRK 295
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,515,318
Number of extensions: 412796
Number of successful extensions: 1189
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 9
Length of query: 563
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 459
Effective length of database: 8,255,305
Effective search space: 3789184995
Effective search space used: 3789184995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)