BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0100300 Os10g0100300|AK065110
(497 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0100300 NAD-dependent epimerase/dehydratase family pro... 773 0.0
Os06g0360300 NAD-dependent epimerase/dehydratase family pro... 117 2e-26
Os05g0291700 Conserved hypothetical protein 74 2e-13
>Os10g0100300 NAD-dependent epimerase/dehydratase family protein
Length = 497
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/485 (81%), Positives = 393/485 (81%)
Query: 1 MEQAAKATISLSPPSYAGCCMAACPYRSTRHLRRGGGCSARSISSLRHAPSARVYXXXXX 60
MEQAAKATISLSPPSYAGCCMAACPYRSTRHLRRGGGCSARSISSLRHAPSARVY
Sbjct: 1 MEQAAKATISLSPPSYAGCCMAACPYRSTRHLRRGGGCSARSISSLRHAPSARVYAAAAA 60
Query: 61 XXTPESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLK 120
TPESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLK
Sbjct: 61 AATPESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLK 120
Query: 121 VDDDATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYM 180
VDDDATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYM
Sbjct: 121 VDDDATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYM 180
Query: 181 ATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWGVLCWKRRAEEALIGSGLPYT 240
ATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWGVLCWKRRAEEALIGSGLPYT
Sbjct: 181 ATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWGVLCWKRRAEEALIGSGLPYT 240
Query: 241 IVRPGGMERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAI 300
IVRPGGMERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAI
Sbjct: 241 IVRPGGMERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAI 300
Query: 301 AETTAPLLPTEDQLANIPSKRXXXXXXXXXXXXXXXXKPIQQSQRPLSPYTAFVDLKXXX 360
AETTAPLLPTEDQLANIPSKR KPIQQSQRPLSPYTAFVDLK
Sbjct: 301 AETTAPLLPTEDQLANIPSKRQPPPEPEVVQQGETPPKPIQQSQRPLSPYTAFVDLKPPS 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXLNSSATGTPISVDQPKQQQRPLSPYTRYEELKX 420
LNSSATGTPISVDQPKQQQRPLSPYTRYEELK
Sbjct: 361 SPSPCPPSAAAPAPTSTDTAAAGSSSTLNSSATGTPISVDQPKQQQRPLSPYTRYEELKP 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTPITGDQLNQQQSPLSPYTR 480
NGTPITGDQLNQQQSPLSPYTR
Sbjct: 421 PSSPSPTPPSAASSASVSASPDTPPAAAASSAALDSSANGTPITGDQLNQQQSPLSPYTR 480
Query: 481 YEELK 485
YEELK
Sbjct: 481 YEELK 485
>Os06g0360300 NAD-dependent epimerase/dehydratase family protein
Length = 291
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 148/311 (47%), Gaps = 45/311 (14%)
Query: 14 PSYAGCCMAACPYRSTRHLRRGGGCSARSISSLRHAPSARVYXXXXXXXTPESKSTKEND 73
P A C+ P +TR L ++ ++S++ AP++ S K+
Sbjct: 16 PLAAFACLCPGPRPATRKL----SLTSTAVSTIDSAPAS-------------SSDAKKTT 58
Query: 74 LVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDDATSPAERLE 133
VF+AG+TG+ G R V + ++ GF V AG RA L D + L+
Sbjct: 59 TVFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRAR------RSLPQDPN-------LQ 105
Query: 134 IVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYMATNNLVQAATAAK 193
+V D+ + +V AI A VVC+ G D P+++D T NLV+A A
Sbjct: 106 LVRADV-MEGTDKLVDAIRGADAVVCATGFRRS--FDPFAPWKVDNFGTVNLVEACRKAG 162
Query: 194 VEHFILVTSLGTNRIGF-----PAF-LLNLFWGVLCWKRRAEEALIGSGLPYTIVRPGGM 247
V FILV+S+ N PA+ +LNLF VL K +AE+ + SG+ YTI+RPGG+
Sbjct: 163 VTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGL 222
Query: 248 -ERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAIAETTAP 306
E+P T N+V+ EDT G +S QVAE+ R + KVVE + A
Sbjct: 223 TEQP-----PTGNIVMEPEDTLYEGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAH 277
Query: 307 LLPTEDQLANI 317
P +D A+I
Sbjct: 278 NRPLKDLFASI 288
>Os05g0291700 Conserved hypothetical protein
Length = 484
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 111/243 (45%), Gaps = 41/243 (16%)
Query: 70 KENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDDATSPA 129
K+ VF+AGATG+ G R + ++ GF VRAGV A L + ++ SP
Sbjct: 85 KDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPDLASAQELARLASAYRL----ISPT 140
Query: 130 E--RLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYMATNN--- 184
E RL VE D E I +IG A VV ++GA+EK GP + T+
Sbjct: 141 EARRLNAVESDFEDPEA--IAKSIGPATKVVVTVGAAEK------GPDG-GVVTTDEALR 191
Query: 185 LVQAATAAKVEHFILVTSLGTNR----------IGFPAFLLNLFWGVLCWKRRAEEA-LI 233
+VQAA A V H ++V LG GF +F NLF V A ++
Sbjct: 192 VVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQSLPLNEFLAKVV 251
Query: 234 GSGLPYTIVRPGGMERPTDAF--KETHNLVVAVEDT------YVGGLVSNLQVAELIACI 285
+ + YT+++ TD + + T+ LV+A E G VS LQ+A L+A +
Sbjct: 252 ETDVRYTLIK----TSLTDDYSPESTYGLVLAKEGASSTTSSTETGKVSKLQIAGLVADV 307
Query: 286 ASN 288
SN
Sbjct: 308 FSN 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,687,506
Number of extensions: 442307
Number of successful extensions: 1104
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 4
Length of query: 497
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 392
Effective length of database: 11,553,331
Effective search space: 4528905752
Effective search space used: 4528905752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)