Os05g0291700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0291700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.77 | 0.351 | 13.9 | -1.49 | 0.665 | -0.497 | 0.803 | -0.966 | -0.73 | 9.42 | 28.92 | 5828 | -- | -- |
| 56.53 | 0.35 | 13.9 | -1.74 | 0.686 | -0.542 | 0.817 | -- | -0.746 | 9.36 | 29.3 | 5830 | -- | -- |
| 56.87 | 0.351 | 13.9 | -1.48 | 0.665 | -0.52 | -- | -0.925 | -0.836 | 9.5 | 29.1 | 11498 | -- | -- |
| 58.37 | 0.356 | 13.9 | -1.7 | 0.702 | -0.65 | -- | -- | -0.889 | 8.94 | 29.4 | 11479 | -- | -- |
| 82.58 | 0.423 | 13.9 | -1.47 | -- | -0.519 | -- | -0.917 | -0.844 | -- | 29.1 | 11589 | -- | -- |
| 72.89 | 0.4 | 13.9 | -1.58 | 0.66 | -- | 0.794 | -- | -0.722 | 9.22 | -- | -- | -- | -- |
| 75.07 | 0.406 | 13.9 | -1.55 | 0.654 | -- | -- | -- | -0.72 | 9.42 | -- | -- | -- | -- |
| 82.39 | 0.423 | 14 | -1.82 | -- | -0.661 | -- | -- | -0.976 | -- | 29.5 | 11586 | -- | -- |
| 134.35 | 0.54 | 13.9 | -- | 0.671 | -0.295 | -- | -- | -0.585 | 9.38 | 30.75 | 7776 | -- | -- |
| 100.16 | 0.468 | 13.9 | -1.55 | -- | -- | -- | -- | -0.718 | -- | -- | -- | -- | -- |
| 138.32 | 0.55 | 13.9 | -- | 0.656 | -- | -- | -- | -0.548 | 9.59 | -- | -- | -- | -- |
| 159.16 | 0.588 | 13.9 | -- | -- | -0.296 | -- | -- | -0.503 | -- | 30.8 | 5809 | -- | -- |
| 163.78 | 0.597 | 13.9 | -- | -- | -- | -- | -- | -0.546 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 5 | 50.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 7 | 51.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 8 | 51.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 14 | 51.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 95 | 51.87 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 110 | 51.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 285 | 52.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 325 | 53.08 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 376 | 53.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 378 | 53.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 388 | 53.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 418 | 53.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 420 | 53.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 16 |
| 421 | 53.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 432 | 53.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 433 | 53.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 435 | 53.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 481 | 54.19 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 483 | 54.21 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 493 | 54.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 511 | 54.29 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 512 | 54.29 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 546 | 54.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 552 | 54.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 553 | 54.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 622 | 54.52 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 625 | 54.53 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 20 | NA |
| 626 | 54.53 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 20 | NA |
| 637 | 54.53 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 20 | NA |
| 640 | 54.54 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 643 | 54.54 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 646 | 54.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 647 | 54.57 | radiation | 10.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 650 | 54.58 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 665 | 54.60 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 691 | 54.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 711 | 54.64 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 738 | 54.67 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 741 | 54.68 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 746 | 54.68 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 770 | 54.70 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 785 | 54.74 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 805 | 54.79 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 858 | 54.86 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 868 | 54.87 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 897 | 54.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 899 | 54.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 909 | 54.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 915 | 54.90 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 921 | 54.91 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 944 | 54.93 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 973 | 54.95 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |