BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0291700 Os05g0291700|AK099865
         (484 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0291700  Conserved hypothetical protein                      850   0.0  
Os10g0100300  NAD-dependent epimerase/dehydratase family pro...    69   1e-11

>Os05g0291700 Conserved hypothetical protein
          Length = 484

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/484 (90%), Positives = 437/484 (90%)

Query: 1   MPPALTSNPPSFRPLSTPLTRRRAATTFLCRVGPGKPSKDTGADDEPKKRSFFADFGKLS 60
           MPPALTSNPPSFRPLSTPLTRRRAATTFLCRVGPGKPSKDTGADDEPKKRSFFADFGKLS
Sbjct: 1   MPPALTSNPPSFRPLSTPLTRRRAATTFLCRVGPGKPSKDTGADDEPKKRSFFADFGKLS 60

Query: 61  DGRSLIPAFPPAAAGSLFAGGRGRKDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPD 120
           DGRSLIPAFPPAAAGSLFAGGRGRKDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPD
Sbjct: 61  DGRSLIPAFPPAAAGSLFAGGRGRKDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPD 120

Query: 121 LASAQELARLASAYRLISPTEARRLNAVESDFEDPEAIAKSIGPATKVVVTVGAAEKGPD 180
           LASAQELARLASAYRLISPTEARRLNAVESDFEDPEAIAKSIGPATKVVVTVGAAEKGPD
Sbjct: 121 LASAQELARLASAYRLISPTEARRLNAVESDFEDPEAIAKSIGPATKVVVTVGAAEKGPD 180

Query: 181 GGVVTTDEALRVVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQS 240
           GGVVTTDEALRVVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQS
Sbjct: 181 GGVVTTDEALRVVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQS 240

Query: 241 LPLNEFLAKVVETDVRYTLIKTSLTDDYSPESTYGLVLXXXXXXXXXXXXXXXXVSKLQI 300
           LPLNEFLAKVVETDVRYTLIKTSLTDDYSPESTYGLVL                VSKLQI
Sbjct: 241 LPLNEFLAKVVETDVRYTLIKTSLTDDYSPESTYGLVLAKEGASSTTSSTETGKVSKLQI 300

Query: 301 AGLVADVFSNVAVAENXXXXXXXXXXXXXXXIEEAFSAIPEDSRRKEYQDAVAKAQAEEE 360
           AGLVADVFSNVAVAEN               IEEAFSAIPEDSRRKEYQDAVAKAQAEEE
Sbjct: 301 AGLVADVFSNVAVAENKVVQVSTSSSVTSKTIEEAFSAIPEDSRRKEYQDAVAKAQAEEE 360

Query: 361 TRASQRTRQAEEDTTTVKAGGKKTPSDXXXXXXXXXXXXXXXXRAKGFGTDFSWEKLSTQ 420
           TRASQRTRQAEEDTTTVKAGGKKTPSD                RAKGFGTDFSWEKLSTQ
Sbjct: 361 TRASQRTRQAEEDTTTVKAGGKKTPSDEAAASEAQASLENLLSRAKGFGTDFSWEKLSTQ 420

Query: 421 LAGVATQDSDEVEPKAKKLAPQRAVVKPAAQKTRPTPKQPESKPDVRPVFGGLFKQETIF 480
           LAGVATQDSDEVEPKAKKLAPQRAVVKPAAQKTRPTPKQPESKPDVRPVFGGLFKQETIF
Sbjct: 421 LAGVATQDSDEVEPKAKKLAPQRAVVKPAAQKTRPTPKQPESKPDVRPVFGGLFKQETIF 480

Query: 481 VDED 484
           VDED
Sbjct: 481 VDED 484



>Os10g0100300 NAD-dependent epimerase/dehydratase family protein
          Length = 497

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 107/245 (43%), Gaps = 39/245 (15%)

Query: 82  RGRKDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPDLASAQELARLASAYRL----I 137
           +  K+   VF+AGATG+ G R  +  ++ GF VRAGV     A  L +     ++     
Sbjct: 67  KSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDDAT 126

Query: 138 SPTEARRLNAVESDFEDPEA--IAKSIGPATKVVVTVGAAEK------GPDGGVVTTDEA 189
           SP E  RL  VE D E      I  +IG A  VV ++GA+EK      GP    +     
Sbjct: 127 SPAE--RLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYR--IDYMAT 182

Query: 190 LRVVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQSLPLNEFLAK 249
             +VQAA  A V H ++V  LG              GF +F  NLF  V         A 
Sbjct: 183 NNLVQAATAAKVEHFILVTSLGTNR----------IGFPAFLLNLFWGVLCWKRRAEEA- 231

Query: 250 VVETDVRYTLIK----TSLTDDYSPESTYGLVLXXXXXXXXXXXXXXXXVSKLQIAGLVA 305
           ++ + + YT+++       TD +  + T+ LV+                VS LQ+A L+A
Sbjct: 232 LIGSGLPYTIVRPGGMERPTDAF--KETHNLVV------AVEDTYVGGLVSNLQVAELIA 283

Query: 306 DVFSN 310
            + SN
Sbjct: 284 CIASN 288



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,404,200
Number of extensions: 656891
Number of successful extensions: 2381
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2378
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)