BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0291700 Os05g0291700|AK099865
(484 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511 364 e-101
AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642 65 1e-10
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 50 2e-06
>AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511
Length = 510
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 230/514 (44%), Positives = 298/514 (57%), Gaps = 47/514 (9%)
Query: 5 LTSNPPSFRPLSTPLTRRRAATTFLCRVGPGKPSKDTGADD----EPKKRSFFADFGKLS 60
LT+ PP RR+ T + + K G DD + K F DFGKL
Sbjct: 10 LTTAPPQ----GVRFNRRKPRLTVWAKQTAFQLGKTKGDDDSEGKQKGKNPFQFDFGKLP 65
Query: 61 DGRSLIPAFPPAAAGSLFAGGRGRKDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPD 120
D +SLIP + G +F R +KDP T+FVAGATGQAG+RIAQTLL++GF+VRAGVPD
Sbjct: 66 DMKSLIPVVTNPSTGLVFGNNR-KKDPGTIFVAGATGQAGIRIAQTLLQRGFSVRAGVPD 124
Query: 121 LASAQELARLASAYRLISPTEARRLNAVESDFEDPEAIAKSIGPATKVVVTVGAAEKGPD 180
L +AQ+LAR+A+ Y+++S E +RLNAV+S F+D E+IAK+IG ATKVVVTVGA E GPD
Sbjct: 125 LGAAQDLARVAATYKILSNDEVKRLNAVQSPFQDAESIAKAIGNATKVVVTVGATENGPD 184
Query: 181 GGVVTTDEALRVVQAADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQS 240
V T+D AL VVQAA+LAGV+HV +VYD G SG STYNVLDG TSFF NLF++ Q
Sbjct: 185 AQVSTSD-ALLVVQAAELAGVSHVAIVYD---GTISG-STYNVLDGITSFFGNLFAKSQP 239
Query: 241 LPLNEFLAKVVETDVRYTLIKTSLTDDYSPESTYGLVLXXXXXXXXXXXXXXX--XVSKL 298
L +++ + KV +TDV YTLIKTSLT+D+SPE Y +V+ V KL
Sbjct: 240 LTISDLIEKVAQTDVAYTLIKTSLTEDFSPEKAYNVVVSAEGSNSGSGSSSSEAYKVPKL 299
Query: 299 QIAGLVADVFSNVAVAENXXXXXXXXXXXXXXXIEEAFSAIPEDSRRKEYQDAVAKAQAE 358
+IA LVAD+F+N AVAEN ++E FS IPED RRK Y DA+A+ +AE
Sbjct: 300 KIASLVADIFANTAVAENKVVEVSTDPSAPSRPVDELFSVIPEDGRRKVYADAIARERAE 359
Query: 359 EETRASQRTRQAEEDTTTVKAGGKKTPSDXXXXXXXXXXXXXXXXRAKGFGTD------- 411
EE + + + + + S+ A G D
Sbjct: 360 EEAKVAADKAREAAEAAKEFEKQMQKLSEKEAEAASLAEDAQQKADAVGVTVDGLFNKAK 419
Query: 412 -----FSWEKLSTQLAGVATQDSDEV----------EPKAKKLAPQRAVVK-----PAAQ 451
SW KL +Q A A Q++ E + KA+ L P++AVVK P A
Sbjct: 420 DISSGLSWNKLGSQFA-TAIQNASETPKVQVATVRGQAKARNLPPKKAVVKQRPSSPFAS 478
Query: 452 KTRPT-PKQPESKPDVRPVFGGLFKQETIFVDED 484
K + PK+PE +VR VFGGLFKQETI++D+D
Sbjct: 479 KPKEERPKKPEK--EVRKVFGGLFKQETIYIDDD 510
>AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642
Length = 641
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 85 KDPQTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPDLASAQELARLASAYRLISPTE--- 141
K+ VFVAGATG+ G R + LL+ GF VRAGV A L + +L + E
Sbjct: 79 KEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQ 138
Query: 142 -ARRLNAVESDFEDPEAIAKSIGPATKVVVTVGAAEK------GPDGGVVTTDEALRVVQ 194
+L VE D E ++I ++G A+ ++ +GA+EK GP + +V
Sbjct: 139 PVEKLEIVECDLEKKDSIQPALGNASVIICCIGASEKEISDITGPYR--IDYLATKNLVD 196
Query: 195 AADLAGVTHVVVVYDLGAGDPSGESTYNVLDGFTSFFSNLFSRVQSLPLNEFLAKVVETD 254
AA A V + ++V LG GF + NLF V A ++E+
Sbjct: 197 AATSAKVNNFILVTSLGTNK----------FGFPAAILNLFWGVLCWKRKAEEA-LIESG 245
Query: 255 VRYTLIKTS----LTDDYSPESTYGLVLXXXXXXXXXXXXXXXXVSKLQIAGLVADVFSN 310
+ Y +++ TD Y + T+ L L VS LQ+A L+A + N
Sbjct: 246 LNYAIVRPGGMERPTDAY--KETHNLTL------ALDDTLFGGQVSNLQVAELLACMAKN 297
Query: 311 VAVAENXXXXXXXXXXXXXXXIEEAFSAIP 340
++ + IE+ IP
Sbjct: 298 PQLSFSKIVEVVAETTAPLTPIEKLLEKIP 327
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 88 QTVFVAGATGQAGVRIAQTLLRQGFAVRAGVPDLASAQELARLASAYRLISPTEARRLNA 147
+ VFVAGATGQ G RI + LL +GFAV+AGV D+ A+ S + L
Sbjct: 47 KKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKT-----------SFKDDPSLQI 95
Query: 148 VESDF-EDPEAIAKSIGPATKVVVTVGAAEKGPDGGV---VTTDEALRVVQAADLAGVTH 203
V +D E P+ +A+ IG ++ V+ G D V + +V A GV
Sbjct: 96 VRADVTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEK 155
Query: 204 VVVVYDLGAGDPSGESTYNVLDGFTSFFSNLF--SRVQSLPLNEFLAKVVETDVRYTLIK 261
V+V + +G + +L+ F NLF + V L +++ K + + YT+++
Sbjct: 156 FVLVSSILV---NGAAMGQILNP-AYLFLNLFGLTLVAKLQAEKYIKK---SGINYTIVR 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,282,382
Number of extensions: 368290
Number of successful extensions: 1071
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 382
Effective length of database: 8,310,137
Effective search space: 3174472334
Effective search space used: 3174472334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)