BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0572400 Os09g0572400|AK069041
(575 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0572400 Similar to Abcf2-prov protein 1081 0.0
Os08g0564100 Similar to ATP-binding cassette, sub-family F,... 1023 0.0
Os03g0441500 ABC transporter related domain containing protein 405 e-113
Os04g0658400 309 4e-84
Os11g0603200 Similar to ABCF-type protein 220 2e-57
>Os09g0572400 Similar to Abcf2-prov protein
Length = 575
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/547 (97%), Positives = 533/547 (97%)
Query: 29 ITLSERTCTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLEXXXXXXXXXXXXXXCGKS 88
ITLSERTCTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLE CGKS
Sbjct: 29 ITLSERTCTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLELNYGRRYGLLGLNGCGKS 88
Query: 89 CLLKAIGCRELPIPPHMDIYHLTHEIEASDMSALQAVISCDEQRLQLEKEAEILAAQDDG 148
CLLKAIGCRELPIPPHMDIYHLTHEIEASDMSALQAVISCDEQRLQLEKEAEILAAQDDG
Sbjct: 89 CLLKAIGCRELPIPPHMDIYHLTHEIEASDMSALQAVISCDEQRLQLEKEAEILAAQDDG 148
Query: 149 GGEALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALF 208
GGEALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALF
Sbjct: 149 GGEALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALF 208
Query: 209 MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLK 268
MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLK
Sbjct: 209 MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLK 268
Query: 269 LYTGNYDQYVQTRAELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLA 328
LYTGNYDQYVQTRAELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLA
Sbjct: 269 LYTGNYDQYVQTRAELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLA 328
Query: 329 KMERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSR 388
KMERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSR
Sbjct: 329 KMERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSR 388
Query: 389 VALVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMK 448
VALVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMK
Sbjct: 389 VALVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMK 448
Query: 449 EYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNH 508
EYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNH
Sbjct: 449 EYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNH 508
Query: 509 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMEFKEHLR 568
LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMEFKEHLR
Sbjct: 509 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMEFKEHLR 568
Query: 569 SKAGVDD 575
SKAGVDD
Sbjct: 569 SKAGVDD 575
>Os08g0564100 Similar to ATP-binding cassette, sub-family F, member 2 (Iron
inhibited ABC transporter 2) (HUSSY-18)
Length = 592
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/547 (88%), Positives = 517/547 (94%)
Query: 29 ITLSERTCTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLEXXXXXXXXXXXXXXCGKS 88
+ LS+RTCT VL SHPLSRDIHIESLSLTFHGHDL++D++LE CGKS
Sbjct: 46 LKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKS 105
Query: 89 CLLKAIGCRELPIPPHMDIYHLTHEIEASDMSALQAVISCDEQRLQLEKEAEILAAQDDG 148
LL AIGCRELPIP HMDIYHL+ EIEASDMSALQAVI CDE+R++LEKEAEIL+AQDDG
Sbjct: 106 TLLTAIGCRELPIPEHMDIYHLSSEIEASDMSALQAVICCDEERMKLEKEAEILSAQDDG 165
Query: 149 GGEALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALF 208
GG+ALDR+YERLEA+DASTAEKRAAEILFGLGFNK MQAKKT DFSGGWRMRIALARALF
Sbjct: 166 GGDALDRIYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTQDFSGGWRMRIALARALF 225
Query: 209 MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLK 268
MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQ++KLK
Sbjct: 226 MNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLK 285
Query: 269 LYTGNYDQYVQTRAELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLA 328
LY+GNYDQYVQTR+ELEENQMKQY+WEQ+QIASMKEYIARFGHGSAKLARQAQSKEKTLA
Sbjct: 286 LYSGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLA 345
Query: 329 KMERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSR 388
KMERGGLTEKVVRDKVL FRFTDVG LPPPVLQFVEV+FGYTPDNLIYKNLDFGVDLDSR
Sbjct: 346 KMERGGLTEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNLDFGVDLDSR 405
Query: 389 VALVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMK 448
+ALVGPNGAGKSTLLKLMTGDL PLDGMVRRHNHLRIAQ+HQHLAEKLDLDM ALQYMM+
Sbjct: 406 IALVGPNGAGKSTLLKLMTGDLAPLDGMVRRHNHLRIAQYHQHLAEKLDLDMPALQYMMR 465
Query: 449 EYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNH 508
EYPGNEEE+MRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLA+R+P +LLLDEPTNH
Sbjct: 466 EYPGNEEEKMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNH 525
Query: 509 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMEFKEHLR 568
LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIM+FKEHLR
Sbjct: 526 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMDFKEHLR 585
Query: 569 SKAGVDD 575
S+AG+ D
Sbjct: 586 SRAGLSD 592
>Os03g0441500 ABC transporter related domain containing protein
Length = 710
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/548 (42%), Positives = 337/548 (61%), Gaps = 30/548 (5%)
Query: 47 RDIHIESLSLTFHGHDLLLDTDLEXXXXXXXXXXXXXXCGKSCLLKAIGCRELPIPPHMD 106
+DI +E+ S++ G +LL + L GKS LLK + R++P+P +D
Sbjct: 156 KDIVLENFSVSARGKELLKNASLRISHGRRYGLVGPNGMGKSTLLKLLSWRQVPVPRSID 215
Query: 107 IYHLTHEIEASDMSALQAVISCDEQRLQLEKE-AEILAAQDDGGGEALDRVYERLEAIDA 165
+ + EI + SAL+AV++ DE+ L E A++ A+ D E L VYE+L D+
Sbjct: 216 VLLVEQEIIGDNRSALEAVVAADEELAALRAEQAKLEASNDADDNERLAEVYEKLNLRDS 275
Query: 166 STAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALFMNPTILLLDEPTNHLDL 225
A RA++IL GLGF++ MQA+ T FSGGWRMRI+LARALFM PT+LLLDEPTNHLDL
Sbjct: 276 DAARARASKILAGLGFDQAMQARSTKSFSGGWRMRISLARALFMQPTLLLLDEPTNHLDL 335
Query: 226 EACVWLEETL-KKFDRILVVISHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQ----YVQT 280
A +WLE+ L ++ + L+V+SH +DFLN VC IIH+ ++ L +Y GN+D Y Q
Sbjct: 336 RAVLWLEQYLCSQWKKTLIVVSHDRDFLNTVCNEIIHLHDKNLHVYRGNFDDFESGYEQK 395
Query: 281 RAELE------ENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAK----M 330
R E+ E QMK + + A K + K A +++ K K +A M
Sbjct: 396 RKEMNRKFEVFEKQMKAAKKTGSKAAQDKVKGQALSKAN-KEAAKSKGKGKNVANDDDDM 454
Query: 331 ERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYK--NLDFGVDLDSR 388
+ L +K + KV F F + L PP+LQ +EV F Y P+ +K +D G+D+ +R
Sbjct: 455 KPADLPQKWLDYKV-EFHFPEPTLLTPPLLQLIEVGFSY-PNRPDFKLSGVDVGIDMGTR 512
Query: 389 VALVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMK 448
VA+VGPNGAGKSTLL L+ GDL P G VRR LRI ++ QH + L ++ +A+QY+++
Sbjct: 513 VAIVGPNGAGKSTLLNLLAGDLTPTKGEVRRSQKLRIGRYSQHFVDLLTMEENAVQYLLR 572
Query: 449 EYPGNE----EERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDE 504
+P E E +RA +GKFGL G + P+ LS GQ++RV+F ++ PH+LLLDE
Sbjct: 573 LHPDQEGMSKAEAVRAKLGKFGLPGHNHLTPIVKLSGGQKARVVFTSISMSHPHILLLDE 632
Query: 505 PTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVA-----QEIWVCEKQAVTRWEGD 559
PTNHLD+++ID+LA+AL+E+ GG+VLVSHD RLI++V EIWV E V +++G
Sbjct: 633 PTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEQRSEIWVVEDGTVNKFDGT 692
Query: 560 IMEFKEHL 567
++K+ L
Sbjct: 693 FEDYKDEL 700
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Query: 375 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLIP---------------------L 413
+ KN + R LVGPNG GKSTLLKL++ +P L
Sbjct: 172 LLKNASLRISHGRRYGLVGPNGMGKSTLLKLLSWRQVPVPRSIDVLLVEQEIIGDNRSAL 231
Query: 414 DGMVRRHNHLRIAQFHQHLAEKL----DLDMSALQYMMKEYPGNEEERMRAA--IGKFGL 467
+ +V L + Q E D + A Y ++ R RA+ + G
Sbjct: 232 EAVVAADEELAALRAEQAKLEASNDADDNERLAEVYEKLNLRDSDAARARASKILAGLGF 291
Query: 468 SGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNHLDIETIDSLAEAL-NEWDG 526
Q ++ S G R R+ A + +P +LLLDEPTNHLD+ + L + L ++W
Sbjct: 292 DQAMQARSTKSFSGGWRMRISLARALFMQPTLLLLDEPTNHLDLRAVLWLEQYLCSQWKK 351
Query: 527 GLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGDIMEFKEHLRSK 570
L++VSHD +N V EI + + + G+ +F+ K
Sbjct: 352 TLIVVSHDRDFLNTVCNEIIHLHDKNLHVYRGNFDDFESGYEQK 395
>Os04g0658400
Length = 606
Score = 309 bits (791), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 197/541 (36%), Positives = 289/541 (53%), Gaps = 52/541 (9%)
Query: 47 RDIHIESLSLTFHGHDLLLDTDLEXXXXXXXXXXXXXXCGKSCLLKAIGCRELPIPPHMD 106
RD+ +E + G L L GK+ LLK + R+LP+P +
Sbjct: 87 RDVVVEDSDVWVQGVALFEGASLRVAHGRRYGLVGPNGKGKTTLLKLLHWRKLPVPRGIR 146
Query: 107 IYHLTHEIEASD-MSALQAVISCDEQRLQLEKEA---EILAAQDDGGGEALDRVYERLEA 162
+ + E + D ++ V++ DE+ L E E +A G L VYE L
Sbjct: 147 VTLVVQEDDNRDPRPVIEVVLAADEELATLRAERDQLEASSAAAAANGARLAEVYEELTQ 206
Query: 163 IDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALFMNPTILLLDEPTNH 222
TA RAA+IL GLGF++ QA+ FSGGW RIALA ALFM PT+LLLDEPTNH
Sbjct: 207 RGWDTAPARAAKILAGLGFDQASQARPASSFSGGWIKRIALAGALFMQPTLLLLDEPTNH 266
Query: 223 LDLEACVWLEETL-KKFDRILVVISHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTR 281
LDL A +WLEE L + LVV+SH + FLN +C ++H+Q++KL Y G +D +V +
Sbjct: 267 LDLRAVLWLEEYLTAQCKSTLVVVSHEEGFLNAICDEVVHLQDKKLHAYRGGFDSFVGS- 325
Query: 282 AELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVR 341
+EQ + +MKE S +LA+ A+ + G K
Sbjct: 326 ------------YEQKKAKAMKE--------SERLAKAAR---------KSGRRAPKKWH 356
Query: 342 DKVLTFRFTDVGTLP--PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGK 399
D + F F L P+L+ E G+T +D V + RVA+VGPNGAGK
Sbjct: 357 DYTVEFHFAAPTELAGGGPLLRLAEA--GFTRGGFQLSAIDADVSMGQRVAVVGPNGAGK 414
Query: 400 STLLKLMTGDLIPLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQY------MMKEYP-- 451
STLLKL+ G+L P G RR+ LRI + QH + L + S +Q+ + +P
Sbjct: 415 STLLKLLAGELTPTSGEARRNPKLRIGLYSQHFCDALPEEKSPVQHGQCHRECLDTHPHL 474
Query: 452 GNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNHLDI 511
++ RA + +FGL+ ++ + + LS GQ++RV A +A EPH+LLLDEPTN+LD+
Sbjct: 475 KSKPWEARAKLARFGLAKESHLTTIGKLSGGQKARVALASVALGEPHVLLLDEPTNNLDM 534
Query: 512 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAQE-----IWVCEKQAVTRWEGDIMEFKEH 566
+ ID+LA+AL+E+ GG+V+VSHD RL+++V + +WV + V ++G E+++
Sbjct: 535 QNIDALADALDEFAGGVVIVSHDSRLVSRVCDDEERSALWVVQDGTVRPYDGTFAEYRDD 594
Query: 567 L 567
L
Sbjct: 595 L 595
>Os11g0603200 Similar to ABCF-type protein
Length = 690
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/530 (30%), Positives = 262/530 (49%), Gaps = 22/530 (4%)
Query: 49 IHIESLSLTFHGHDLLLDTDLEXXXXXXXXXXXXXXCGKSCLLKAIGCRELP-------I 101
+ +E ++ ++ G +L D E GK+ L+ I E P
Sbjct: 96 VRLEGIAKSYKGVTVLRDVSWEVQRGEKVGLVGVNGAGKTTQLRIIAGLEDPDAGAVVKA 155
Query: 102 PPHMDIYHLTHEIEASDMSALQAVISCD-----EQRLQLEK-EAEILAAQDDGGG----- 150
+M I L+ E E ++ E R +LEK +A + A +D
Sbjct: 156 KDNMRIAFLSQEFEVCASRTVREEFLAAFEEEMEVRSRLEKVQAALEGATEDMDLMGRLL 215
Query: 151 EALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCDFSGGWRMRIALARALFMN 210
+ LD + R + +D E + +++ LGF + FSGGW+MR++L + L +
Sbjct: 216 DELDLLQRRSQDVDLGMVEVKIQKLMPELGFAPEDADRLVASFSGGWQMRMSLGKILLQD 275
Query: 211 PTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNRKLKLY 270
P +LLLDEPTNH+DL+ WLE LK + +V+ISH + FL+ +CT I+ + K Y
Sbjct: 276 PDLLLLDEPTNHVDLDTIEWLESYLKTQEVPMVIISHDRAFLDQLCTKIVETEFGVSKTY 335
Query: 271 TGNYDQYVQTRAELEENQMKQYRWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKM 330
GNY +YV +A E Q + +Q +I KE I R G G A +A S++K L K+
Sbjct: 336 KGNYSEYVLAKAIWVETQYAAWEKQQKEIEQTKELINRLGAGVN--AGRASSEQKKLEKL 393
Query: 331 ERGGLTEKVVRDKVLTFRFTDVGTLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVA 390
E+ GL EK + K L RF + G VL + FG+ + L + N + V+ ++A
Sbjct: 394 EKEGLIEKPFQRKQLKIRFPERGQSGRTVLTIRNLEFGFGEEKL-FNNANLIVERGEKIA 452
Query: 391 LVGPNGAGKSTLLKLMTGDLIPLDGMVRRHNHLRIAQ-FHQHLAEKLDLDMSALQYMMKE 449
++GPNG GKSTLLKL+ G G V H + F Q+ AE LDL+ + L + +
Sbjct: 453 IIGPNGCGKSTLLKLILGMEKTQGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLDTVAEA 512
Query: 450 YPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAWREPHMLLLDEPTNHL 509
+ + ++ +G+ ++ LS G+++R+ F +L+LDEPTNHL
Sbjct: 513 AEDWKIDDIKGLLGRCNFRDDMLDRKVQFLSGGEKARLAFCKFLVTPSTLLILDEPTNHL 572
Query: 510 DIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVTRWEGD 559
DI + + L EA++E+ G ++ VSHD + Q+ + + Q + ++GD
Sbjct: 573 DIPSKEMLEEAISEYTGTVITVSHDRYFVKQIVNRVIEVKDQTIQDYQGD 622
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 150 GEALDRVYERLEAIDASTAEKRAAEILFGL----GFNKHMQAKKTCDFSGGWRMRIALAR 205
EALD L+ + A AE + + GL F M +K SGG + R+A +
Sbjct: 496 AEALDLEKTVLDTV-AEAAEDWKIDDIKGLLGRCNFRDDMLDRKVQFLSGGEKARLAFCK 554
Query: 206 ALFMNPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNR 265
L T+L+LDEPTNHLD+ + LEE + ++ ++ +SH + F+ + +I ++++
Sbjct: 555 FLVTPSTLLILDEPTNHLDIPSKEMLEEAISEYTGTVITVSHDRYFVKQIVNRVIEVKDQ 614
Query: 266 KLKLYTGNYDQYVQ 279
++ Y G+Y+ Y++
Sbjct: 615 TIQDYQGDYNYYLE 628
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,182,114
Number of extensions: 726214
Number of successful extensions: 2807
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2793
Number of HSP's successfully gapped: 7
Length of query: 575
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 469
Effective length of database: 11,501,117
Effective search space: 5394023873
Effective search space used: 5394023873
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)