Os09g0572400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Abcf2-prov protein.
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Os09g0572400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Abcf2-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.88 | 0.393 | 9.13 | 2.1 | 0.42 | 1.23 | -0.211 | -0.442 | 0.305 | 4.22 | 26.1 | 3756 | -- | -- |
| 70.01 | 0.39 | 9.14 | 1.99 | 0.408 | 1.19 | -0.236 | -- | 0.283 | 4.3 | 26.01 | 3733 | -- | -- |
| 70.01 | 0.39 | 9.13 | 2.1 | 0.42 | 1.23 | -- | -0.416 | 0.303 | 4.27 | 26.12 | 3760 | -- | -- |
| 70.13 | 0.39 | 9.14 | 1.99 | 0.413 | 1.19 | -- | -- | 0.279 | 4.29 | 26.09 | 3746 | -- | -- |
| 78.58 | 0.413 | 9.13 | 2.09 | -- | 1.19 | -- | -0.35 | 0.319 | -- | 25.92 | 3630 | -- | -- |
| 110.27 | 0.492 | 9.19 | 1.55 | 0.381 | -- | -0.169 | -- | 0.0501 | 5.78 | -- | -- | -- | -- |
| 110.33 | 0.492 | 9.19 | 1.55 | 0.381 | -- | -- | -- | 0.0509 | 5.87 | -- | -- | -- | -- |
| 78.66 | 0.413 | 9.14 | 1.99 | -- | 1.17 | -- | -- | 0.296 | -- | 25.86 | 3629 | -- | -- |
| 167.67 | 0.606 | 9.2 | -- | 0.263 | 0.288 | -- | -- | -0.00409 | 7.63 | 25.5 | 3747 | -- | -- |
| 117.84 | 0.507 | 9.19 | 1.56 | -- | -- | -- | -- | 0.0597 | -- | -- | -- | -- | -- |
| 173.33 | 0.616 | 9.23 | -- | 0.405 | -- | -- | -- | -0.121 | 5.69 | -- | -- | -- | -- |
| 165.99 | 0.6 | 9.23 | -- | -- | 0.638 | -- | -- | -0.0922 | -- | 28.9 | 4746 | -- | -- |
| 181.84 | 0.629 | 9.23 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 3 | 69.09 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 8 | 69.10 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 10 | 69.14 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 21 | 69.55 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 23 | 69.66 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 55 | 70.10 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 56 | 70.19 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 59 | 70.28 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 64 | 70.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 65 | 70.33 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 69 | 70.37 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 80 | 70.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 100 | 70.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 119 | 71.00 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 126 | 71.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 128 | 71.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 143 | 71.31 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 146 | 71.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 162 | 71.35 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 164 | 71.35 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 178 | 71.48 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 200 | 71.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 225 | 71.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 236 | 71.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 275 | 71.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 310 | 71.90 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 319 | 71.94 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 320 | 71.94 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 335 | 71.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 337 | 71.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 379 | 72.12 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 403 | 72.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 413 | 72.21 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 16 | 20 |
| 446 | 72.31 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 467 | 72.37 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 488 | 72.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 491 | 72.41 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 580 | 72.51 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 592 | 72.52 | temperature | 25.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 607 | 72.52 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 612 | 72.53 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 628 | 72.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 632 | 72.56 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 688 | 72.61 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 728 | 72.64 | temperature | 25.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 751 | 72.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 849 | 72.76 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 16 | NA |
| 869 | 72.78 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 925 | 72.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 952 | 72.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 23 |