BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0560000 Os09g0560000|AK073825
         (833 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0560000  Armadillo-like helical domain containing protein   1672   0.0  
Os07g0520400  Conserved hypothetical protein                       79   1e-14
Os06g0244700  Armadillo-like helical domain containing protein     76   1e-13

>Os09g0560000 Armadillo-like helical domain containing protein
          Length = 833

 Score = 1672 bits (4330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 806/833 (96%), Positives = 806/833 (96%)

Query: 1   MKSNAVTSKGKAVFELKHRLVQAINKIADRDTYQIGLDELEKAADTLPPDMVGPFLSCVV 60
           MKSNAVTSKGKAVFELKHRLVQAINKIADRDTYQIGLDELEKAADTLPPDMVGPFLSCVV
Sbjct: 1   MKSNAVTSKGKAVFELKHRLVQAINKIADRDTYQIGLDELEKAADTLPPDMVGPFLSCVV 60

Query: 61  DTDAEQKSAVRKECIKVIGTLARSHGSLVAPHMTKMVTSIVKRLKDADSVVRDACVDTCG 120
           DTDAEQKSAVRKECIKVIGTLARSHGSLVAPHMTKMVTSIVKRLKDADSVVRDACVDTCG
Sbjct: 61  DTDAEQKSAVRKECIKVIGTLARSHGSLVAPHMTKMVTSIVKRLKDADSVVRDACVDTCG 120

Query: 121 TLALCARGYGDGGAALVALVRPLFESLGEQNRYVQAGAASCLAKVIDESNYFPGPVLPQM 180
           TLALCARGYGDGGAALVALVRPLFESLGEQNRYVQAGAASCLAKVIDESNYFPGPVLPQM
Sbjct: 121 TLALCARGYGDGGAALVALVRPLFESLGEQNRYVQAGAASCLAKVIDESNYFPGPVLPQM 180

Query: 181 LVRVVKLLKNPHFMAKPAVIELIRSIIQAEGASTEQSLTSALTSIMDALKSSDWTTRKXX 240
           LVRVVKLLKNPHFMAKPAVIELIRSIIQAEGASTEQSLTSALTSIMDALKSSDWTTRK  
Sbjct: 181 LVRVVKLLKNPHFMAKPAVIELIRSIIQAEGASTEQSLTSALTSIMDALKSSDWTTRKAA 240

Query: 241 XXXXXXXXXXXGYLVASFRTSCLRSLERSKFDKVKPVRDAITQAIQLWKVIPGSDTPEPS 300
                      GYLVASFRTSCLRSLERSKFDKVKPVRDAITQAIQLWKVIPGSDTPEPS
Sbjct: 241 SIALSSIALSSGYLVASFRTSCLRSLERSKFDKVKPVRDAITQAIQLWKVIPGSDTPEPS 300

Query: 301 EAGSSTKENFFGDHHDGRSINDGGSRDTSFRRVDPASSVSAISGNSITSSKKRSPLSINK 360
           EAGSSTKENFFGDHHDGRSINDGGSRDTSFRRVDPASSVSAISGNSITSSKKRSPLSINK
Sbjct: 301 EAGSSTKENFFGDHHDGRSINDGGSRDTSFRRVDPASSVSAISGNSITSSKKRSPLSINK 360

Query: 361 IALNNAANQQRSKLSDWHVEISVPKQNMIPLVDFEEKVSGNGSMLKGSNRSPYEIVDNDS 420
           IALNNAANQQRSKLSDWHVEISVPKQNMIPLVDFEEKVSGNGSMLKGSNRSPYEIVDNDS
Sbjct: 361 IALNNAANQQRSKLSDWHVEISVPKQNMIPLVDFEEKVSGNGSMLKGSNRSPYEIVDNDS 420

Query: 421 KYEYDPMDDKQDCSSMSEVASRSCETKHVTSAQECVEDCDSARDIEQFPRAQKSKSIDST 480
           KYEYDPMDDKQDCSSMSEVASRSCETKHVTSAQECVEDCDSARDIEQFPRAQKSKSIDST
Sbjct: 421 KYEYDPMDDKQDCSSMSEVASRSCETKHVTSAQECVEDCDSARDIEQFPRAQKSKSIDST 480

Query: 481 VTDITSHGTHTCCLGAMKELSHIRKQLQEMERKQANIFDMLQEFMSNSVENMSVLSMKVH 540
           VTDITSHGTHTCCLGAMKELSHIRKQLQEMERKQANIFDMLQEFMSNSVENMSVLSMKVH
Sbjct: 481 VTDITSHGTHTCCLGAMKELSHIRKQLQEMERKQANIFDMLQEFMSNSVENMSVLSMKVH 540

Query: 541 NLENAVDKTVYTITQSESRYHLPGSKFIKNQSATXXXXXXXXXXXXXXDANYKPPPIPHL 600
           NLENAVDKTVYTITQSESRYHLPGSKFIKNQSAT              DANYKPPPIPHL
Sbjct: 541 NLENAVDKTVYTITQSESRYHLPGSKFIKNQSATSSPRVSTSTPRSSVDANYKPPPIPHL 600

Query: 601 KQEKKWMQDQPSKGLNMGVKEGEFLKSHTHDKTRKPGVVRSESALGRYVPSSARTRASGV 660
           KQEKKWMQDQPSKGLNMGVKEGEFLKSHTHDKTRKPGVVRSESALGRYVPSSARTRASGV
Sbjct: 601 KQEKKWMQDQPSKGLNMGVKEGEFLKSHTHDKTRKPGVVRSESALGRYVPSSARTRASGV 660

Query: 661 KGNFPVSLTNSCEQPELQNALRASKEFDGNDDMASAYVEALNSGDCDYLIDVMDRTGPVL 720
           KGNFPVSLTNSCEQPELQNALRASKEFDGNDDMASAYVEALNSGDCDYLIDVMDRTGPVL
Sbjct: 661 KGNFPVSLTNSCEQPELQNALRASKEFDGNDDMASAYVEALNSGDCDYLIDVMDRTGPVL 720

Query: 721 EKLSRETTSELLRVIAGQFLNKKMFDLALPWLQQVADLSMIYKPSQLFVSVRAQKEFLAL 780
           EKLSRETTSELLRVIAGQFLNKKMFDLALPWLQQVADLSMIYKPSQLFVSVRAQKEFLAL
Sbjct: 721 EKLSRETTSELLRVIAGQFLNKKMFDLALPWLQQVADLSMIYKPSQLFVSVRAQKEFLAL 780

Query: 781 LEEAATSGSTEPAIRIAIAQLAFKLTKVCEVAPCRKVLSRVCRGNETIMATAM 833
           LEEAATSGSTEPAIRIAIAQLAFKLTKVCEVAPCRKVLSRVCRGNETIMATAM
Sbjct: 781 LEEAATSGSTEPAIRIAIAQLAFKLTKVCEVAPCRKVLSRVCRGNETIMATAM 833



>Os07g0520400 Conserved hypothetical protein
          Length = 355

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 2/94 (2%)

Query: 692 DMASAYVEALNSGDCDYLIDVMDRTGPVLEKLSRETTSELLRVIAGQFL-NKKMFDLALP 750
           DM SAY E L++GD + L+ +M++TGPV+++LS E  +E+L  + GQFL  +  +D+AL 
Sbjct: 229 DMDSAYAEVLSTGDAELLVKLMEQTGPVVDQLSNEVANEVLHAV-GQFLVEESFYDIALS 287

Query: 751 WLQQVADLSMIYKPSQLFVSVRAQKEFLALLEEA 784
           WLQQ+ DL M      L + + A+ + L  L EA
Sbjct: 288 WLQQLTDLVMDNGSGYLGIPLDAKNDLLLGLHEA 321



>Os06g0244700 Armadillo-like helical domain containing protein
          Length = 646

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 165/383 (43%), Gaps = 46/383 (12%)

Query: 193 FMAKPAVIELIRSIIQAEGASTEQSLTSALTSIMDALKSSDWTTRKXXXXXXXXXXXXXG 252
           F AKPA+I LI     A  AS   +  +A+ S+ DAL   DW  RK             G
Sbjct: 184 FKAKPALISLI---GAASAASGGGAAATAVPSLRDALTGEDWAARKAAAEALALLALEHG 240

Query: 253 YLVASFRTSCLRSLERSKFDKVKPVRDAITQAIQLWKVIPGSD-----TPEPSEAGSSTK 307
             +   + SC+   E  +FDKVK VR+++ + I+ WK IP  D     +  P    S T+
Sbjct: 241 DNLVEQKPSCIAVFEAKRFDKVKIVRESMNRMIEAWKEIPDMDEEVCSSDVPPSPQSQTR 300

Query: 308 ENFFGDHHDGRSINDG-GSRDTSFRRVDPASSVSAISGNSITSSKKRSPLSINKIALNNA 366
            +      DGR   D  GS           +SV ++   +++ +KK  P    + AL+N 
Sbjct: 301 SSSTDSASDGRYPADSLGS-----------NSVQSVRRRNLSPTKKSPP----REALHNV 345

Query: 367 ANQQRSKLSDWHVEISVP-KQNMIPLVDFEEKVSGNGSMLKGSNRSPYEIVDNDSKYEYD 425
           +N++ S  S  + + S P + N     +FE KV    ++    + +P + V  + K   D
Sbjct: 346 SNRRTSSSSIGNKKNSPPSRHNSGQAKNFECKV----NVTDAPDATPIKTV-TEEKLLKD 400

Query: 426 PMDDKQDCSSMSEVASRSCETKHVTSAQECVEDCDSARDIEQFPRAQKSKSIDSTVTDIT 485
                        V +R  E + V   +   E  +    ++   R       D +     
Sbjct: 401 -----------GNVRAR-LEARRVLFQKNGEERYNKVPGLKSGSRVVPYNGDDDSEEIAE 448

Query: 486 SHGTHTCCLGAMKE--LSHIRKQLQEMERKQANIFDMLQEFMSNSVENMSVLSMKVHNLE 543
           S   H       KE  LS IR QL ++E +Q ++ ++LQ+FM +S   +  L  +V+ LE
Sbjct: 449 SEDVHEEFQSGHKEEDLSKIRMQLVQIENQQTSLLNLLQKFMGSSQNGIRSLETRVNGLE 508

Query: 544 NAVDKTVYTITQSESRYHLPGSK 566
            A+D+    +  S  R  +P S+
Sbjct: 509 MALDEISRDLAASSGR--MPSSE 529



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,633,457
Number of extensions: 1017490
Number of successful extensions: 2972
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 3
Length of query: 833
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 724
Effective length of database: 11,344,475
Effective search space: 8213399900
Effective search space used: 8213399900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)