Os07g0520400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0520400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.18 | 0.249 | 11.2 | -0.132 | 0.606 | 0.888 | 0.199 | 0.485 | -0.0709 | 15.9 | 20.55 | 1272 | -- | -- |
| 28.2 | 0.247 | 11.2 | -0.237 | 0.617 | 0.925 | 0.142 | -- | -0.0912 | 15.3 | 22.06 | 1129 | -- | -- |
| 28.24 | 0.248 | 11.2 | -0.173 | 0.618 | 0.918 | -- | 0.303 | -0.075 | 15.3 | 21.25 | 1115 | -- | -- |
| 28.27 | 0.248 | 11.2 | -0.242 | 0.618 | 0.92 | -- | -- | -0.09 | 15.4 | 22.06 | 1131 | -- | -- |
| 31.5 | 0.261 | 11.2 | -0.195 | -- | 1.25 | -- | 0.334 | -0.102 | -- | 18.61 | 323 | -- | -- |
| 53.98 | 0.344 | 11.2 | 0.0479 | 0.502 | -- | 0.0961 | -- | 0.0978 | 16.4 | -- | -- | -- | -- |
| 54 | 0.344 | 11.2 | 0.0487 | 0.502 | -- | -- | -- | 0.0984 | 16.4 | -- | -- | -- | -- |
| 31.58 | 0.262 | 11.2 | -0.256 | -- | 1.26 | -- | -- | -0.121 | -- | 18.7 | 320 | -- | -- |
| 29.69 | 0.254 | 11.2 | -- | 0.621 | 0.869 | -- | -- | -0.0563 | 15.4 | 22.12 | 1115 | -- | -- |
| 67.57 | 0.384 | 11.2 | 0.0289 | -- | -- | -- | -- | 0.0851 | -- | -- | -- | -- | -- |
| 54.07 | 0.344 | 11.2 | -- | 0.501 | -- | -- | -- | 0.0929 | 16.4 | -- | -- | -- | -- |
| 33.17 | 0.268 | 11.2 | -- | -- | 1.17 | -- | -- | -0.083 | -- | 19.11 | 318 | -- | -- |
| 67.59 | 0.384 | 11.2 | -- | -- | -- | -- | -- | 0.0819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 2 | 27.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 5 | 28.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 9 | 28.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 44 | 28.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 50 | 28.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 65 | 28.26 | temperature | 20 | 1440 | > th | dose dependent | sin | 1 | NA |
| 181 | 28.43 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 198 | 28.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 199 | 28.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 333 | 28.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 406 | 28.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 427 | 28.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 469 | 28.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 554 | 28.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 648 | 28.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 830 | 29.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 940 | 29.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 952 | 29.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 4 |