BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0520400 Os07g0520400|J065124A13
(355 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0520400 Conserved hypothetical protein 719 0.0
Os09g0560000 Armadillo-like helical domain containing protein 79 5e-15
>Os07g0520400 Conserved hypothetical protein
Length = 355
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 YNFQDFMGGSHDSMVTLENRVRGLERVVEEMARDISLSSGRRGGGPMLGFDSSPGRSSMK 60
YNFQDFMGGSHDSMVTLENRVRGLERVVEEMARDISLSSGRRGGGPMLGFDSSPGRSSMK
Sbjct: 1 YNFQDFMGGSHDSMVTLENRVRGLERVVEEMARDISLSSGRRGGGPMLGFDSSPGRSSMK 60
Query: 61 YNGFHEYSNSKFGRDRDGRVGFAERYFSGDGMSSGVRSSEPWDSYAYSGSRSGMNARRGL 120
YNGFHEYSNSKFGRDRDGRVGFAERYFSGDGMSSGVRSSEPWDSYAYSGSRSGMNARRGL
Sbjct: 61 YNGFHEYSNSKFGRDRDGRVGFAERYFSGDGMSSGVRSSEPWDSYAYSGSRSGMNARRGL 120
Query: 121 DSVSSDNRVPRNERSNDQAGPRRGWDKGQGPFRFGEGPSARSAWRASKDEATLEAIRVAG 180
DSVSSDNRVPRNERSNDQAGPRRGWDKGQGPFRFGEGPSARSAWRASKDEATLEAIRVAG
Sbjct: 121 DSVSSDNRVPRNERSNDQAGPRRGWDKGQGPFRFGEGPSARSAWRASKDEATLEAIRVAG 180
Query: 181 EDNGTSRAAARVAIRELDGETLNDDNQGDERGPIWESWTRAMDAIHVGDMDSAYAEVLST 240
EDNGTSRAAARVAIRELDGETLNDDNQGDERGPIWESWTRAMDAIHVGDMDSAYAEVLST
Sbjct: 181 EDNGTSRAAARVAIRELDGETLNDDNQGDERGPIWESWTRAMDAIHVGDMDSAYAEVLST 240
Query: 241 GDAELLVKLMEQTGPVVDQLSNEVANEVLHAVGQFLVEESFYDIALSWLQQLTDLVMDNG 300
GDAELLVKLMEQTGPVVDQLSNEVANEVLHAVGQFLVEESFYDIALSWLQQLTDLVMDNG
Sbjct: 241 GDAELLVKLMEQTGPVVDQLSNEVANEVLHAVGQFLVEESFYDIALSWLQQLTDLVMDNG 300
Query: 301 SGYLGIPLDAKNDLLLGLHEATAIELPDDWEGATPVQIMKQLASSWRIDLQQLIS 355
SGYLGIPLDAKNDLLLGLHEATAIELPDDWEGATPVQIMKQLASSWRIDLQQLIS
Sbjct: 301 SGYLGIPLDAKNDLLLGLHEATAIELPDDWEGATPVQIMKQLASSWRIDLQQLIS 355
>Os09g0560000 Armadillo-like helical domain containing protein
Length = 833
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 229 DMDSAYAEVLSTGDAELLVKLMEQTGPVVDQLSNEVANEVLHAV-GQFLVEESFYDIALS 287
DM SAY E L++GD + L+ +M++TGPV+++LS E +E+L + GQFL + +D+AL
Sbjct: 692 DMASAYVEALNSGDCDYLIDVMDRTGPVLEKLSRETTSELLRVIAGQFL-NKKMFDLALP 750
Query: 288 WLQQLTDLVMDNGSGYLGIPLDAKNDLLLGLHEA 321
WLQQ+ DL M L + + A+ + L L EA
Sbjct: 751 WLQQVADLSMIYKPSQLFVSVRAQKEFLALLEEA 784
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,284,173
Number of extensions: 610653
Number of successful extensions: 1513
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)