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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0560000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0607) R2 : 0.268
β1 : -3.27 (0.337) R2dD : 0.615 R2D : -0.127
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.03 (0.172) R2dE : 0.0795 R2E : -0.018
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.28 (0.99) R2dD*E : 0.258 R2D*E : -0.281
γ1 : -0.0433 (0.131) R2dN8 : 0.000523 R2N8 : -0.0248
σ : 0.865
deviance : 345.02
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.74
memory length : 3833
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.87 0.848 4.01 -3.26 0.393 0.94 -1.74 -5.94 -0.0541 24 20.35 4246 -- --
351.7 0.873 3.81 -1.99 0.391 1.1 -1.84 -- 0.204 23.6 4.068 11148 -- --
337.03 0.855 3.99 -3.09 0.368 0.925 -- -5.94 -0.014 0.129 20.62 3835 -- --
366.23 0.891 3.8 -1.76 0.412 1.01 -- -- 0.258 0.302 5.015 10172 -- --
345.02 0.865 3.98 -3.27 -- 1.03 -- -6.28 -0.0433 -- 20.74 3833 -- --
368.73 0.9 3.73 -1.24 0.436 -- -1.82 -- 0.567 0.209 -- -- -- --
382.99 0.916 3.73 -1.17 0.443 -- -- -- 0.575 0.441 -- -- -- --
374.38 0.901 3.77 -1.68 -- 1.11 -- -- 0.359 -- 9.596 5249 -- --
416.75 0.956 3.71 -- 0.544 0.466 -- -- 0.65 0.762 5.015 10172 -- --
395.32 0.929 3.72 -1.15 -- -- -- -- 0.582 -- -- -- -- --
419.05 0.958 3.7 -- 0.426 -- -- -- 0.705 0.302 -- -- -- --
383.23 0.912 3.71 -- -- -0.908 -- -- 0.635 -- 35.09 47520 -- --
430.48 0.968 3.69 -- -- -- -- -- 0.71 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.02 radiation 1 14400 < th dose dependent rect. 5 1
2 312.67 humidity 90 43200 > th dose dependent sin 1 NA
3 312.68 humidity 90 43200 > th dose dependent rect. 3 14
4 312.70 humidity 90 43200 > th dose dependent rect. 4 11
9 312.83 humidity 90 43200 > th dose dependent rect. 3 17
20 313.39 humidity 90 43200 > th dose dependent rect. 5 6
30 313.84 radiation 1 43200 < th dose independent rect. 18 15
33 313.89 radiation 1 14400 < th dose dependent rect. 24 6
35 313.90 radiation 1 14400 < th dose dependent rect. 2 4
48 314.01 humidity 90 43200 > th dose dependent rect. 7 2
78 314.18 radiation 1 43200 > th dose independent rect. 18 15
83 314.24 radiation 1 43200 < th dose dependent sin 9 NA
88 314.28 humidity 90 43200 < th dose independent rect. 5 19
100 314.37 radiation 1 43200 < th dose independent rect. 5 4
106 314.39 radiation 1 43200 > th dose independent rect. 5 4
107 314.40 radiation 1 43200 < th dose independent rect. 24 9
109 314.41 radiation 1 43200 < th dose independent rect. 3 6
116 314.42 humidity 90 43200 < th dose independent sin 2 NA
119 314.43 humidity 90 43200 > th dose independent sin 2 NA
217 314.63 humidity 90 43200 > th dose independent rect. 3 11
220 314.64 radiation 1 43200 < th dose independent sin 9 NA
236 314.75 radiation 1 43200 > th dose independent sin 9 NA
237 314.75 humidity 90 43200 < th dose independent rect. 5 6
256 314.85 humidity 90 43200 > th dose independent rect. 5 6
263 314.87 humidity 90 43200 > th dose independent rect. 5 19
289 314.95 humidity 90 43200 > th dose independent rect. 3 14
302 314.97 humidity 90 43200 > th dose independent rect. 4 8
334 315.03 humidity 90 43200 > th dose independent rect. 3 16
337 315.04 humidity 90 43200 < th dose independent rect. 4 9
389 315.24 humidity 90 43200 > th dose independent rect. 3 20
437 315.32 humidity 90 43200 < th dose independent rect. 4 11
485 315.47 humidity 90 43200 < th dose independent sin 20 NA
534 315.60 humidity 90 43200 > th dose independent rect. 7 3
595 315.76 atmosphere 1005 43200 > th dose independent rect. 17 1
613 315.82 radiation 1 43200 < th dose dependent rect. 10 23
622 315.85 radiation 1 43200 < th dose dependent no NA NA
625 315.85 radiation 1 43200 < th dose dependent rect. 24 19
636 315.85 radiation 1 43200 < th dose dependent rect. 3 23
648 315.86 radiation 1 43200 < th dose dependent rect. 4 15
699 315.89 radiation 1 43200 < th dose dependent rect. 17 8
701 315.90 atmosphere 1005 43200 < th dose independent rect. 17 1
707 315.90 radiation 1 43200 < th dose dependent rect. 17 2
743 316.02 radiation 1 43200 < th dose independent rect. 17 2
746 316.02 radiation 1 43200 < th dose dependent rect. 7 23
754 316.04 radiation 1 43200 < th dose independent rect. 17 8
804 316.17 humidity 90 43200 < th dose independent rect. 18 1
829 316.29 radiation 1 43200 < th dose independent rect. 5 14
873 316.35 radiation 1 43200 > th dose independent rect. 5 14
884 316.36 humidity 90 43200 > th dose independent sin 20 NA
887 316.37 radiation 1 43200 < th dose independent rect. 3 16
900 316.37 radiation 1 43200 < th dose independent rect. 2 23
906 316.38 radiation 1 43200 < th dose independent no NA NA
949 316.43 radiation 1 43200 < th dose independent rect. 10 23
956 316.45 radiation 1 43200 > th dose independent no NA NA