Os06g0244700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os06g0244700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 391.24 | 0.929 | 3.19 | 0.512 | 0.175 | -0.803 | 0.46 | -0.641 | -0.0813 | 10.5 | 1015 | 5011 | -- | -- |
| 391.88 | 0.922 | 3.18 | 0.585 | 0.174 | -0.712 | 0.45 | -- | -0.0587 | 10.5 | 1015 | 5113 | -- | -- |
| 392.09 | 0.922 | 3.18 | 0.539 | 0.175 | -0.836 | -- | -0.704 | -0.0813 | 10.3 | 1015 | 5010 | -- | -- |
| 392.7 | 0.923 | 3.18 | 0.604 | 0.171 | -0.711 | -- | -- | -0.0581 | 10.2 | 1015 | 5121 | -- | -- |
| 393.92 | 0.924 | 3.19 | 0.536 | -- | -0.834 | -- | -0.701 | -0.0799 | -- | 1015 | 5008 | -- | -- |
| 411.53 | 0.951 | 3.2 | 0.492 | 0.171 | -- | 0.425 | -- | -0.182 | 10.6 | -- | -- | -- | -- |
| 412.27 | 0.951 | 3.2 | 0.509 | 0.169 | -- | -- | -- | -0.181 | 10.6 | -- | -- | -- | -- |
| 394.51 | 0.925 | 3.18 | 0.603 | -- | -0.709 | -- | -- | -0.0579 | -- | 1015 | 5121 | -- | -- |
| 402.03 | 0.934 | 3.19 | -- | 0.17 | -0.664 | -- | -- | -0.133 | 10 | 1015 | 5059 | -- | -- |
| 414.02 | 0.951 | 3.21 | 0.506 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 419.1 | 0.958 | 3.22 | -- | 0.166 | -- | -- | -- | -0.238 | 10.4 | -- | -- | -- | -- |
| 403.73 | 0.936 | 3.2 | -- | -- | -0.671 | -- | -- | -0.134 | -- | 1014 | 5074 | -- | -- |
| 420.77 | 0.957 | 3.22 | -- | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 375.08 | wind | 3.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 5 | 377.95 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 23 | 3 |
| 7 | 377.95 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 23 | 3 |
| 9 | 380.47 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 3 |
| 10 | 380.47 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 3 |
| 19 | 383.54 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 37 | 385.59 | wind | 3.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 41 | 386.10 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 386.35 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 47 | 386.39 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 48 | 386.41 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 49 | 386.42 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 71 | 387.29 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 100 | 389.45 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 103 | 389.51 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 106 | 389.54 | humidity | 50.0 | 90 | < th | dose independent | rect. | 15 | 3 |
| 142 | 389.60 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 15 | 3 |
| 194 | 390.01 | humidity | 50.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 203 | 390.14 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 323 | 390.56 | humidity | 50.0 | 90 | < th | dose independent | sin | 12 | NA |
| 324 | 390.56 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 333 | 390.69 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 372 | 391.03 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 381 | 391.12 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 24 | 3 |
| 396 | 391.32 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 407 | 391.32 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 422 | 391.36 | humidity | 50.0 | 90 | > th | dose independent | sin | 12 | NA |
| 425 | 391.38 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 426 | 391.39 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 427 | 391.42 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 444 | 391.55 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 4 |
| 446 | 391.56 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 453 | 391.58 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 475 | 391.71 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 16 |
| 480 | 391.74 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 496 | 391.84 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 497 | 391.85 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 504 | 391.88 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 519 | 391.95 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 541 | 392.04 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 545 | 392.06 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 559 | 392.15 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 561 | 392.16 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 566 | 392.19 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 574 | 392.23 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 610 | 392.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 643 | 392.36 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 16 |
| 695 | 392.49 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 714 | 392.56 | temperature | 20.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 733 | 392.60 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 754 | 392.63 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 11 |
| 757 | 392.64 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 768 | 392.66 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 780 | 392.67 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 785 | 392.68 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 792 | 392.71 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 1 |
| 805 | 392.72 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 812 | 392.74 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 21 | 15 |
| 826 | 392.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 896 | 392.87 | temperature | 20.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 928 | 392.89 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 974 | 392.94 | wind | 7.0 | 720 | < th | dose dependent | rect. | 14 | 1 |