BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0553200 Os09g0553200|AK065780
(469 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0553200 Similar to UTP--glucose-1-phosphate uridylyltr... 906 0.0
Os02g0117700 Similar to UTP--glucose-1-phosphate uridylyltr... 796 0.0
Os01g0264100 Similar to UTP--glucose-1-phosphate uridylyltr... 447 e-126
>Os09g0553200 Similar to UTP--glucose-1-phosphate uridylyltransferase (EC
2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP)
(UGPase)
Length = 469
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/469 (95%), Positives = 449/469 (95%)
Query: 1 MAVTADVKLEGLRAATDKLDQISENEKSGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVP 60
MAVTADVKLEGLRAATDKLDQISENEKSGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVP
Sbjct: 1 MAVTADVKLEGLRAATDKLDQISENEKSGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVP 60
Query: 61 YDTLSAAPEDLNEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGFTFLDLIVIQIE 120
YDTLSAAPEDLNE MGCTGPKSVIEVRNGFTFLDLIVIQIE
Sbjct: 61 YDTLSAAPEDLNETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIE 120
Query: 121 SLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSK 180
SLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSK
Sbjct: 121 SLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSK 180
Query: 181 GKTGKDGWYPPGHGDVFPSLNNSGKLDTLLAQGKEYVFVANSDNLGAIVDIKILNHLIHN 240
GKTGKDGWYPPGHGDVFPSLNNSGKLDTLLAQGKEYVFVANSDNLGAIVDIKILNHLIHN
Sbjct: 181 GKTGKDGWYPPGHGDVFPSLNNSGKLDTLLAQGKEYVFVANSDNLGAIVDIKILNHLIHN 240
Query: 241 QNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV 300
QNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV
Sbjct: 241 QNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV 300
Query: 301 NLKAIKRLVEAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPV 360
NLKAIKRLVEAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPV
Sbjct: 301 NLKAIKRLVEAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPV 360
Query: 361 KATSDLLLVQSDLYTLVDGFVIRNPARTNPSNPSIELGPEFKKVANFLARFKSIPSIVEL 420
KATSDLLLVQSDLYTLVDGFVIRNPARTNPSNPSIELGPEFKKVANFLARFKSIPSIVEL
Sbjct: 361 KATSDLLLVQSDLYTLVDGFVIRNPARTNPSNPSIELGPEFKKVANFLARFKSIPSIVEL 420
Query: 421 DTLKVSGDVWFGSGVTLKGKVTITAKSGKLEIPDGAVLENKDINGPEDL 469
DTLKVSGDVWFGSGVTLKGKVTITAKSGKLEIPDGAVLENKDINGPEDL
Sbjct: 421 DTLKVSGDVWFGSGVTLKGKVTITAKSGKLEIPDGAVLENKDINGPEDL 469
>Os02g0117700 Similar to UTP--glucose-1-phosphate uridylyltransferase (EC
2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP)
(UGPase)
Length = 467
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/466 (84%), Positives = 414/466 (88%), Gaps = 1/466 (0%)
Query: 5 ADVKLEGLRAATDKLDQISENEKSGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVPYDTL 64
AD KL LR A L QIS+NEKSGFISLV+RYLSGE E +EW+KI TPTDEVVVPYDTL
Sbjct: 2 ADEKLAKLREAVAGLSQISDNEKSGFISLVARYLSGEEEHVEWAKIHTPTDEVVVPYDTL 61
Query: 65 SAAPEDLNEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGFTFLDLIVIQIESLNK 124
+A PEDL E MGCTGPKSVIEVRNGFTFLDLIVIQIESLNK
Sbjct: 62 AAPPEDLEETKKLLNKLAVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESLNK 121
Query: 125 KYGCNVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSKGKTG 184
KYG NVPLLLMNSFNTH+DT KIVEKY+NSNIE+HTFNQSQYPR+V ++FLP PSKGKT
Sbjct: 122 KYGSNVPLLLMNSFNTHEDTLKIVEKYTNSNIEVHTFNQSQYPRVVADEFLPWPSKGKTC 181
Query: 185 KDGWYPPGHGDVFPSLNNSGKLDTLLAQGKEYVFVANSDNLGAIVDIKILNHLIHNQNEY 244
KDGWYPPGHGD+FPSL NSGKLD LL+QGKEYVF+ANSDNLGAIVD+KILNHLIH QNEY
Sbjct: 182 KDGWYPPGHGDIFPSLMNSGKLDLLLSQGKEYVFIANSDNLGAIVDMKILNHLIHKQNEY 241
Query: 245 CMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 304
CMEVTPKTLADVKGGTLISYE +VQLLEIAQVPD HVNEFKSIEKFKIFNTNNLWVNLKA
Sbjct: 242 CMEVTPKTLADVKGGTLISYEDKVQLLEIAQVPDAHVNEFKSIEKFKIFNTNNLWVNLKA 301
Query: 305 IKRLVEAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPVKATS 364
IKRLVEA+ALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF+ AIGINVPRSRFLPVKATS
Sbjct: 302 IKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATS 361
Query: 365 DLLLVQSDLYTLVDGFVIRNPARTNPSNPSIELGPEFKKVANFLARFKSIPSIVELDTLK 424
DL LVQSDLYTLVDGFV RNPARTNPSNPSIELGPEFKKV FL RFKSIPSIVELDTLK
Sbjct: 362 DLQLVQSDLYTLVDGFVTRNPARTNPSNPSIELGPEFKKVGCFLGRFKSIPSIVELDTLK 421
Query: 425 VSGDVWFGSGVTLKGKVTITAKSG-KLEIPDGAVLENKDINGPEDL 469
VSGDVWFGS +TLKGKVTITA+ G KLEIPDGAV+ENKDINGPEDL
Sbjct: 422 VSGDVWFGSSITLKGKVTITAQPGVKLEIPDGAVIENKDINGPEDL 467
>Os01g0264100 Similar to UTP--glucose-1-phosphate uridylyltransferase (EC
2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP)
(UGPase)
Length = 646
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/448 (55%), Positives = 293/448 (65%), Gaps = 72/448 (16%)
Query: 24 ENEKSGFISLVSRYL-SGEAEQIEWSKIQTPTDEVVVPYDTLSAAPEDLNEXXXXXXXXX 82
+ +K F+ LVSRYL E E I+W+K++ PT E+VVPYD+L AP D+ E
Sbjct: 66 DEDKDSFMHLVSRYLIREEKEMIDWNKVERPTPEMVVPYDSLVQAPRDIPEIRNLLNKLA 125
Query: 83 XXXXXXXXXXXMGCTGPKSVIEVRNGFTFLDLIVIQIESLNKKYGCNVPLLLMNSFNTHD 142
M C PK IEVR+G TFLDL ++Q E
Sbjct: 126 VLKLNGGLGTTMECVAPKCTIEVRSGLTFLDLAIMQTE---------------------- 163
Query: 143 DTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSKGKTGKDGWYPPGHGDVFPSLNN 202
IVEKY+N IEIHTFNQ++YPRI+TE FLPL S+G TG WYPPGHGDVF SL
Sbjct: 164 ----IVEKYTN--IEIHTFNQNKYPRIITEKFLPLSSEGSTGSHCWYPPGHGDVFFSLCK 217
Query: 203 SGKLDTLLAQGKEYVFVANSDNLGAIVDIKI--------LNHLIHNQNEYCMEVTPKTLA 254
SG LDT+L+QGKEYVF+A+S+NLGA VDI+I LNHLIHN+NEYCME
Sbjct: 218 SGILDTMLSQGKEYVFIASSENLGATVDIEIESLTSTEILNHLIHNKNEYCME------- 270
Query: 255 DVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAEAL 314
LLEI QVP E+V F VNLKAIKRLV+AEAL
Sbjct: 271 ---------------LLEIFQVPYENVA----------FGYRR--VNLKAIKRLVKAEAL 303
Query: 315 KMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPVKATSDLLLVQSDLY 374
KMEIIPN KEVDGVKVLQLE AG+AI+ FEKAIG+ VPRSRFL VK TSDL L+ SDLY
Sbjct: 304 KMEIIPNLKEVDGVKVLQLEKEAGSAIQCFEKAIGVTVPRSRFLAVKNTSDLFLILSDLY 363
Query: 375 TLVDGFVIRNPARTNPSNPSIELGPEFKKVANFLARFKSIPSIVELDTLKVSGDVWFGSG 434
++DG V RNPAR N +NP I+LGPEF+KV +FL RFKSIPSIV LD+LK+SGDVWFGS
Sbjct: 364 IVMDGTVTRNPARDNSTNPLIDLGPEFRKVDSFLDRFKSIPSIVALDSLKISGDVWFGSR 423
Query: 435 VTLKGKVTITAKSG-KLEIPDGAVLENK 461
+TLKG+VTI A+ G KL+I DG+V +NK
Sbjct: 424 ITLKGEVTIAAQLGLKLDILDGSVFDNK 451
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,912,820
Number of extensions: 600280
Number of successful extensions: 909
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 3
Length of query: 469
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 365
Effective length of database: 11,605,545
Effective search space: 4236023925
Effective search space used: 4236023925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)