Os09g0553200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase).
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Os09g0553200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.06 | 0.286 | 14.1 | -0.719 | 0.555 | -0.592 | -1.27 | 1.48 | -0.603 | 22.3 | 9.6 | 117 | -- | -- |
| 41.72 | 0.303 | 14.1 | -0.733 | 0.539 | -0.477 | -0.0475 | -- | -0.571 | 21.3 | 9.6 | 117 | -- | -- |
| 39.37 | 0.292 | 14.1 | -0.842 | 0.463 | -0.55 | -- | 0.827 | -0.671 | 22.1 | 11.15 | 116 | -- | -- |
| 41.3 | 0.299 | 14.1 | -0.811 | 0.471 | -0.549 | -- | -- | -0.654 | 21.5 | 14.19 | 65 | -- | -- |
| 43.14 | 0.306 | 14.1 | -0.705 | -- | -0.486 | -- | 1.09 | -0.612 | -- | 9.648 | 730 | -- | -- |
| 47.16 | 0.322 | 14.1 | -0.761 | 0.375 | -- | -0.939 | -- | -0.598 | 16.8 | -- | -- | -- | -- |
| 49.43 | 0.329 | 14.1 | -0.764 | 0.37 | -- | -- | -- | -0.603 | 17 | -- | -- | -- | -- |
| 47.51 | 0.321 | 14.1 | -0.736 | -- | -0.469 | -- | -- | -0.628 | -- | 9.59 | 735 | -- | -- |
| 55.96 | 0.348 | 14.1 | -- | 0.594 | -0.627 | -- | -- | -0.596 | 21.5 | 9.811 | 66 | -- | -- |
| 56.63 | 0.352 | 14.1 | -0.778 | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
| 64.82 | 0.377 | 14.1 | -- | 0.384 | -- | -- | -- | -0.518 | 17 | -- | -- | -- | -- |
| 62.42 | 0.368 | 14.1 | -- | -- | -0.469 | -- | -- | -0.628 | -- | 9.886 | 734 | -- | -- |
| 72.59 | 0.398 | 14 | -- | -- | -- | -- | -- | -0.526 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.36 | radiation | 20 | 90 | < th | dose dependent | sin | 2 | NA |
| 2 | 33.45 | radiation | 10 | 270 | < th | dose dependent | sin | 5 | NA |
| 3 | 33.48 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 9 | 33.93 | humidity | 70 | 90 | > th | dose dependent | sin | 5 | NA |
| 31 | 34.61 | radiation | 10 | 90 | < th | dose independent | sin | 2 | NA |
| 36 | 34.66 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 16 |
| 39 | 34.70 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 41 | 34.72 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 17 |
| 42 | 34.73 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 15 |
| 54 | 34.90 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 62 | 35.00 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 65 | 35.02 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 71 | 35.05 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 73 | 35.08 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 74 | 35.09 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 14 |
| 90 | 35.21 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 14 |
| 106 | 35.31 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 12 |
| 118 | 35.38 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 149 | 35.55 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 18 |
| 153 | 35.56 | humidity | 80 | 90 | > th | dose independent | sin | 5 | NA |
| 174 | 35.62 | humidity | 80 | 90 | > th | dose independent | sin | 3 | NA |
| 175 | 35.62 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 176 | 35.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 179 | 35.62 | humidity | 90 | 270 | < th | dose independent | rect. | 19 | 17 |
| 208 | 35.72 | radiation | 10 | 10 | < th | dose independent | rect. | 4 | 16 |
| 214 | 35.74 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 9 |
| 221 | 35.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 251 | 35.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 252 | 35.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 267 | 35.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 268 | 35.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 282 | 35.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 286 | 35.97 | humidity | 80 | 90 | < th | dose independent | sin | 4 | NA |
| 287 | 35.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 291 | 35.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 347 | 36.08 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 371 | 36.11 | humidity | 90 | 90 | < th | dose dependent | sin | 6 | NA |
| 373 | 36.11 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 442 | 36.24 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 528 | 36.35 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 548 | 36.38 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 23 |
| 564 | 36.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 594 | 36.45 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 595 | 36.45 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 23 |
| 610 | 36.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 641 | 36.50 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 16 |
| 700 | 36.58 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 705 | 36.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 707 | 36.58 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 741 | 36.60 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 785 | 36.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 791 | 36.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 813 | 36.66 | humidity | 80 | 90 | < th | dose independent | rect. | 23 | 15 |
| 832 | 36.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 876 | 36.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 890 | 36.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 938 | 36.77 | radiation | 10 | 90 | < th | dose independent | rect. | 13 | 21 |
| 958 | 36.79 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 989 | 36.82 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |