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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0264100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0164) R2 : 0.0123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0823 (0.0346) R2dN8 : 0.0159 R2N8 : 0.0123
σ : 0.309
deviance : 43.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.88 0.304 2.89 -0.0284 0.0792 -0.232 0.106 1.11 0.0753 12.6 1.03 16 -- --
42.93 0.305 2.88 0.0134 0.074 -0.143 0.139 -- 0.0877 11.8 1.1 16 -- --
41.93 0.302 2.89 -0.0255 0.0789 -0.234 -- 1.16 0.0758 12.8 1 16 -- --
43.07 0.306 2.88 0.0199 0.0753 -0.148 -- -- 0.0896 12.2 1 16 -- --
42.29 0.303 2.9 -0.0243 -- -0.203 -- 1.14 0.074 -- 1.019 16 -- --
43.44 0.309 2.88 0.0325 0.0664 -- 0.162 -- 0.0864 10.6 -- -- -- --
43.54 0.309 2.88 0.0387 0.067 -- -- -- 0.0866 10.1 -- -- -- --
43.42 0.307 2.88 0.0215 -- -0.124 -- -- 0.0869 -- 1.063 16 -- --
43.08 0.306 2.88 -- 0.0757 -0.15 -- -- 0.0859 12.2 1.091 16 -- --
43.81 0.309 2.88 0.0379 -- -- -- -- 0.0865 -- -- -- -- --
43.58 0.309 2.88 -- 0.0668 -- -- -- 0.0823 10 -- -- -- --
43.43 0.307 2.88 -- -- -0.127 -- -- 0.0846 -- 1.068 16 -- --
43.85 0.309 2.89 -- -- -- -- -- 0.0823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.94 radiation 1.0 14400 < th dose dependent rect. 3 1
2 39.09 temperature 20.0 90 < th dose independent rect. 8 1
4 39.10 temperature 25.0 90 < th dose dependent rect. 8 2
6 39.15 temperature 20.0 30 > th dose dependent rect. 2 1
14 39.17 wind 9.0 1440 < th dose independent rect. 3 1
15 39.17 temperature 20.0 30 > th dose independent rect. 2 1
16 39.17 temperature 10.0 1440 > th dose independent rect. 3 1
19 39.17 temperature 30.0 1440 < th dose independent rect. 3 1
23 39.17 humidity 50.0 1440 > th dose independent rect. 3 1
32 39.17 atmosphere 995.0 1440 > th dose independent rect. 3 1
33 39.17 radiation 1.0 1440 < th dose independent rect. 3 1
53 39.17 temperature 10.0 1440 > th dose independent rect. 4 23
57 39.17 atmosphere 1005.0 30 > th dose dependent rect. 2 1
58 39.17 radiation 1.0 1440 < th dose dependent rect. 3 1
68 39.18 atmosphere 1005.0 30 > th dose independent rect. 2 1
69 39.18 wind 3.0 30 < th dose dependent rect. 2 1
73 39.19 wind 3.0 30 < th dose independent rect. 2 1
84 39.20 temperature 10.0 30 > th dose independent rect. 2 1
86 39.20 temperature 30.0 30 < th dose independent rect. 2 1
87 39.20 humidity 50.0 30 > th dose independent rect. 2 1
93 39.20 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 39.20 radiation 1.0 30 < th dose independent rect. 2 1
100 39.20 precipitation 0.1 30 < th dose independent rect. 2 1
101 39.20 temperature 10.0 30 > th dose independent rect. 3 23
102 39.20 humidity 50.0 30 > th dose dependent rect. 2 1
106 39.20 radiation 1.0 30 < th dose dependent rect. 2 1
111 39.20 precipitation 0.1 30 < th dose dependent rect. 2 1
119 39.24 atmosphere 1015.0 30 < th dose dependent rect. 2 1
121 39.26 atmosphere 1000.0 30 > th dose independent rect. 3 23
128 39.29 temperature 30.0 30 < th dose dependent rect. 2 1
129 39.31 wind 1.0 30 > th dose independent rect. 2 1
147 39.39 humidity 80.0 270 < th dose dependent rect. 6 1
177 39.43 precipitation 0.1 30 < th dose independent rect. 3 23
184 39.43 precipitation 0.1 30 < th dose dependent rect. 3 23
190 39.54 humidity 80.0 270 < th dose independent rect. 6 1
194 39.65 temperature 20.0 270 < th dose independent rect. 6 3
195 39.67 temperature 20.0 270 < th dose independent rect. 6 5
207 39.84 wind 9.0 30 < th dose independent rect. 3 23
237 40.27 temperature 30.0 10 < th dose independent rect. 3 23
238 40.31 atmosphere 1015.0 30 < th dose independent rect. 3 23
248 40.45 humidity 50.0 30 > th dose independent rect. 3 23
257 40.58 humidity 80.0 720 > th dose independent rect. 3 4
264 40.63 humidity 80.0 1440 > th dose independent rect. 5 1
300 40.83 temperature 20.0 720 > th dose independent rect. 7 8
310 40.90 humidity 80.0 720 > th dose independent rect. 23 8
519 41.33 radiation 10.0 10 < th dose independent rect. 3 23
535 41.36 wind 1.0 10 > th dose independent rect. 13 23
548 41.39 temperature 20.0 270 > th dose independent rect. 3 14
560 41.43 humidity 90.0 90 < th dose independent rect. 2 1
646 41.57 wind 3.0 270 > th dose dependent rect. 5 2
673 41.59 radiation 20.0 10 < th dose dependent rect. 3 23
682 41.60 wind 1.0 30 < th dose independent rect. 7 20
686 41.60 radiation 40.0 10 < th dose dependent rect. 3 23
697 41.62 wind 1.0 30 > th dose independent rect. 3 23
700 41.63 temperature 20.0 1440 > th dose independent rect. 8 1
729 41.66 temperature 10.0 720 > th dose independent rect. 3 8
730 41.66 atmosphere 995.0 720 > th dose independent rect. 3 8
732 41.66 temperature 10.0 720 > th dose independent rect. 11 16
733 41.66 atmosphere 995.0 720 > th dose independent rect. 11 16
734 41.66 atmosphere 995.0 720 > th dose independent rect. 23 16
745 41.67 temperature 10.0 720 > th dose independent rect. 15 8
746 41.67 atmosphere 995.0 720 > th dose independent rect. 15 8
748 41.67 temperature 10.0 720 > th dose independent rect. 23 16
756 41.68 humidity 50.0 720 > th dose independent rect. 3 8
778 41.71 temperature 25.0 10 < th dose independent rect. 9 1
818 41.73 temperature 25.0 270 > th dose independent rect. 23 4
825 41.74 wind 9.0 720 < th dose independent rect. 3 8
828 41.74 wind 1.0 10 > th dose independent rect. 14 17
846 41.77 precipitation 0.1 720 < th dose independent rect. 15 8
852 41.77 radiation 40.0 30 < th dose independent rect. 3 23
856 41.77 precipitation 0.1 720 < th dose dependent rect. 15 8
890 41.83 temperature 20.0 270 > th dose independent sin 0 NA
893 41.84 humidity 80.0 720 < th dose independent sin 9 NA
898 41.84 temperature 20.0 1440 > th dose independent rect. 7 12
926 41.88 temperature 20.0 270 < th dose independent sin 0 NA
934 41.88 temperature 25.0 270 > th dose dependent rect. 23 4
936 41.88 temperature 10.0 30 > th dose dependent rect. 3 23
939 41.89 precipitation 0.1 720 < th dose independent rect. 3 8
946 41.89 precipitation 0.1 720 < th dose dependent rect. 3 8
950 41.90 wind 1.0 10 > th dose independent rect. 16 15
967 41.91 wind 3.0 30 < th dose dependent rect. 19 8
982 41.92 atmosphere 1015.0 720 < th dose independent rect. 23 16
986 41.92 wind 3.0 10 < th dose dependent rect. 22 5
999 41.93 precipitation 0.1 720 < th dose independent rect. 23 16