BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0264100 Os01g0264100|Os01g0264100
         (646 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17310.2  | chr5:5696955-5700845 REVERSE LENGTH=471            431   e-121
AT3G03250.1  | chr3:749761-754014 REVERSE LENGTH=470              428   e-120

>AT5G17310.2 | chr5:5696955-5700845 REVERSE LENGTH=471
          Length = 470

 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/472 (51%), Positives = 294/472 (62%), Gaps = 79/472 (16%)

Query: 42  KLLRVAASLNGTTGCSARRRAAPRDEDKDSFMHLVSRYLIREEKEMIDWNKVERPTPEMV 101
           KL ++ ++++G T  S        + +K  F++LVSRYL   E + I+W+K++ PT E+V
Sbjct: 8   KLPQLKSAVDGLTEMS--------ENEKSGFINLVSRYL-SGEAQHIEWSKIQTPTDEIV 58

Query: 102 VPYDSLVQAPRDIPEIRXXXXXXXXXXXXXXXXTTMECVAPKCTIEVRSGLTFLDLAIMQ 161
           VPYD +     D  E +                TTM C  PK  IEVR GLTFLDL ++Q
Sbjct: 59  VPYDKMANVSEDASETKYLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQ 118

Query: 162 TE--------------------------IVEKYT--NIEIHTFNQNKYPRIITEKFLPLS 193
            E                          IVEKYT  N++IHTFNQ+KYPR++ ++F+P  
Sbjct: 119 IENLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWP 178

Query: 194 SEGSTGSHCWYPPGHGDVFFSLCKSGILDTMLSQGKEYVFIASSENLGATVDIEIESLTS 253
           S+G T    WYPPGHGDVF SL  SG LD  LSQGKEYVFIA+S+NLGA VD++I     
Sbjct: 179 SKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKI----- 233

Query: 254 TEILNHLIHNKNEYCME----------------------LLEIFQVPYENVA-------- 283
              L HLI NKNEYCME                      LLEI QVP E+V         
Sbjct: 234 ---LKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKF 290

Query: 284 --FGYRR--VNLKAIKRLVKAEALKMEIIPNLKEVDGVKVLQLEKEAGSAIQCFEKAIGV 339
             F      VNLKAIK+LV+A+ALKMEIIPN KEVDGVKVLQLE  AG+AI+ F+ AIGV
Sbjct: 291 KIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGV 350

Query: 340 TVPRSRFLAVKNTSDLFLILSDLYIVMDGTVTRNPARDNSTNPLIDLGPEFRKVDSFLDR 399
            VPRSRFL VK TSDL L+ SDLY ++DG VTRN AR N TNP I+LGPEF+KV SFL R
Sbjct: 351 NVPRSRFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSR 410

Query: 400 FKSIPSIVALDSLKISGDVWFGSRITLKGEVTIAAQLGLKLDILDGSVFDNK 451
           FKSIPSIV LDSLK+SGDVWFGS + LKG+VT+ A  G KL+I D +V +NK
Sbjct: 411 FKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVLENK 462



>AT3G03250.1 | chr3:749761-754014 REVERSE LENGTH=470
          Length = 469

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 288/449 (64%), Gaps = 71/449 (15%)

Query: 66  DEDKDSFMHLVSRYLIREEKEMIDWNKVERPTPEMVVPYDSLVQAPRDIPEIRXXXXXXX 125
           + +K  F+ LVSRYL   E + I+W+K++ PT E+VVPY+ +    +D+ E +       
Sbjct: 23  ESEKSGFISLVSRYL-SGEAQHIEWSKIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLV 81

Query: 126 XXXXXXXXXTTMECVAPKCTIEVRSGLTFLDLAIMQTE---------------------- 163
                    TTM C  PK  IEVR GLTFLDL ++Q E                      
Sbjct: 82  VLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHD 141

Query: 164 ----IVEKYTN--IEIHTFNQNKYPRIITEKFLPLSSEGSTGSHCWYPPGHGDVFFSLCK 217
               IVEKYTN  ++IHTFNQ+KYPR++ ++F+P  S+G T    WYPPGHGDVF +L  
Sbjct: 142 DTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMN 201

Query: 218 SGILDTMLSQGKEYVFIASSENLGATVDIEIESLTSTEILNHLIHNKNEYCME------- 270
           SG LDT LSQGKEYVF+A+S+NLGA VD+ I        L HLI NKNEYCME       
Sbjct: 202 SGKLDTFLSQGKEYVFVANSDNLGAIVDLTI--------LKHLIQNKNEYCMEVTPKTLA 253

Query: 271 ---------------LLEIFQVPYENVA----------FGYRR--VNLKAIKRLVKAEAL 303
                          LLEI QVP E+V           F      VNLKAIK+LV+A+AL
Sbjct: 254 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADAL 313

Query: 304 KMEIIPNLKEVDGVKVLQLEKEAGSAIQCFEKAIGVTVPRSRFLAVKNTSDLFLILSDLY 363
           KMEIIPN KEVDGVKVLQLE  AG+AI+ F+ AIGV VPRSRFL VK +SDL L+ SDLY
Sbjct: 314 KMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLY 373

Query: 364 IVMDGTVTRNPARDNSTNPLIDLGPEFRKVDSFLDRFKSIPSIVALDSLKISGDVWFGSR 423
            ++DG VTRN AR N +NP I+LGPEF+KV +FL RFKSIPSIV LDSLK+SGDVWFGS 
Sbjct: 374 TLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSS 433

Query: 424 ITLKGEVTIAAQLGLKLDILDGSVFDNKH 452
           I LKG+VT+AA+ G+KL+I D +V +NK+
Sbjct: 434 IVLKGKVTVAAKSGVKLEIPDRAVVENKN 462



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,225,033
Number of extensions: 534089
Number of successful extensions: 1192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1180
Number of HSP's successfully gapped: 2
Length of query: 646
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 541
Effective length of database: 8,227,889
Effective search space: 4451287949
Effective search space used: 4451287949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)