Os02g0117700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase).
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Os02g0117700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.78 | 0.7 | 4.54 | -0.451 | 0.837 | 1.67 | -0.599 | -8.11 | -1.22 | 8.77 | 29.88 | 4364 | -- | -- |
| 230.79 | 0.708 | 4.6 | -1.5 | 0.898 | 1.09 | -0.247 | -- | -0.836 | 8.14 | 21.39 | 4462 | -- | -- |
| 221.71 | 0.693 | 4.53 | -0.37 | 0.806 | 1.63 | -- | -7.76 | -1.06 | 8.73 | 29.5 | 4284 | -- | -- |
| 227.18 | 0.702 | 4.6 | -1.65 | 0.847 | 0.949 | -- | -- | -0.909 | 8.72 | 21.57 | 3039 | -- | -- |
| 256.08 | 0.745 | 4.51 | -0.188 | -- | 1.78 | -- | -7.94 | -0.868 | -- | 29.1 | 3871 | -- | -- |
| 247.04 | 0.737 | 4.69 | -2.12 | 0.868 | -- | -0.554 | -- | -1.23 | 8.84 | -- | -- | -- | -- |
| 248.08 | 0.738 | 4.69 | -2.14 | 0.869 | -- | -- | -- | -1.23 | 8.87 | -- | -- | -- | -- |
| 254.72 | 0.743 | 4.64 | -1.77 | -- | 1.02 | -- | -- | -0.894 | -- | 25.6 | 2143 | -- | -- |
| 240.36 | 0.722 | 4.54 | -- | 0.857 | 1.79 | -- | -- | -0.56 | 8.76 | 18.45 | 47520 | -- | -- |
| 291.14 | 0.797 | 4.72 | -2.14 | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
| 368.27 | 0.898 | 4.64 | -- | 0.866 | -- | -- | -- | -0.988 | 9.06 | -- | -- | -- | -- |
| 282.01 | 0.782 | 4.56 | -- | -- | 1.8 | -- | -- | -0.551 | -- | 18.42 | 47520 | -- | -- |
| 411.41 | 0.947 | 4.66 | -- | -- | -- | -- | -- | -0.983 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 12 | 218.91 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 13 | 218.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 17 | 219.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 22 | 219.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 25 | 219.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 26 | 219.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 39 | 219.62 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 43 | 219.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 83 | 220.30 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 94 | 220.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 110 | 220.65 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 118 | 220.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 120 | 220.70 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 126 | 220.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 146 | 220.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 152 | 221.01 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 190 | 221.34 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 229 | 221.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 231 | 221.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 235 | 221.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 239 | 221.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 243 | 221.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 261 | 221.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 265 | 221.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 274 | 221.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 282 | 221.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 288 | 221.73 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 292 | 221.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 293 | 221.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 298 | 221.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 10 |
| 301 | 221.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 305 | 221.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 310 | 221.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 19 |
| 373 | 221.93 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 375 | 221.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 382 | 221.95 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 427 | 222.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 446 | 222.06 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 498 | 222.16 | temperature | 30 | 4320 | < th | dose independent | sin | 21 | NA |
| 511 | 222.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 561 | 222.27 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 591 | 222.36 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 594 | 222.37 | temperature | 30 | 4320 | > th | dose independent | sin | 20 | NA |
| 607 | 222.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 633 | 222.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 645 | 222.45 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 673 | 222.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 16 |
| 674 | 222.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 18 |
| 683 | 222.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 14 |
| 687 | 222.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 701 | 222.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 706 | 222.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 16 |
| 749 | 222.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 752 | 222.53 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 766 | 222.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 21 |
| 807 | 222.56 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 871 | 222.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 924 | 222.75 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |