BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0535000 Os09g0535000|AK058712
(304 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0535000 Similar to Triosephosphate isomerase, chloropl... 548 e-156
Os01g0147900 Triosephosphate isomerase, cytosolic (EC 5.3.1... 320 9e-88
Os01g0841600 Similar to Triosephosphate isomerase, cytosoli... 296 1e-80
>Os09g0535000 Similar to Triosephosphate isomerase, chloroplast precursor (EC
5.3.1.1) (TIM) (Triose-phosphate isomerase)
Length = 304
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 37 GCSRRRAQRVVAMAGSGKFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIY 96
GCSRRRAQRVVAMAGSGKFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIY
Sbjct: 37 GCSRRRAQRVVAMAGSGKFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIY 96
Query: 97 IDQVKNSLTDRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQ 156
IDQVKNSLTDRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQ
Sbjct: 97 IDQVKNSLTDRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQ 156
Query: 157 FIGKKAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPV 216
FIGKKAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPV
Sbjct: 157 FIGKKAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPV 216
Query: 217 WAIGTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDID 276
WAIGTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDID
Sbjct: 217 WAIGTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDID 276
Query: 277 GFLVGGASLKGPDFATIINSVTSKKVAA 304
GFLVGGASLKGPDFATIINSVTSKKVAA
Sbjct: 277 GFLVGGASLKGPDFATIINSVTSKKVAA 304
>Os01g0147900 Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose-
phosphate isomerase)
Length = 253
Score = 320 bits (820), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 155/249 (62%), Positives = 189/249 (75%), Gaps = 3/249 (1%)
Query: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPD--VDVVVAPPFIYIDQVKNSLTDRIEVS 111
KFFVGGNWKCNGT D V K+V LN + V+VVV+PP++++ VK+ L I+V+
Sbjct: 4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVA 63
Query: 112 AQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVK 171
AQN W+ KGGA+TGE+SAE LV++ WVILGHSERR ++GE ++F+G K AYALSQ +K
Sbjct: 64 AQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLK 123
Query: 172 VIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPVWAIGTGKVATPEQAQ 231
VIAC+GE LE+RE+G T DV Q KA ++ I +W +VV+AYEPVWAIGTGKVATP+QAQ
Sbjct: 124 VIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQ 183
Query: 232 EVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFA 291
EVH +R WL NVS EVA RIIYGGSV ANC ELA K D+DGFLVGGASLK P+F
Sbjct: 184 EVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK-PEFI 242
Query: 292 TIINSVTSK 300
IINS T K
Sbjct: 243 DIINSATVK 251
>Os01g0841600 Similar to Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM)
(Triose- phosphate isomerase)
Length = 255
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 155/252 (61%), Positives = 180/252 (71%), Gaps = 3/252 (1%)
Query: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFI--YIDQVKNSLTDRIEVS 111
KFFVGGNWKCNGT + V K+VT LN A + + V V ++ QVK L V+
Sbjct: 5 KFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVA 64
Query: 112 AQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVK 171
AQN W+ KGGA+TGEISAE LV++ WVILGHSERR ++GE F+ K AYALSQ +K
Sbjct: 65 AQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIK 124
Query: 172 VIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPVWAIGTGKVATPEQAQ 231
VIACIGE LE+REAG T +V Q KA A+ I++W +VV+AYEPVWAIGTGKVATP QAQ
Sbjct: 125 VIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQAQ 184
Query: 232 EVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFA 291
EVH +R WL TNVSP VA RIIY GSVN ANC ELA K D+DGFLVGGASLK P+F
Sbjct: 185 EVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLK-PEFV 243
Query: 292 TIINSVTSKKVA 303
II S T K A
Sbjct: 244 DIIKSATVKSSA 255
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,266,922
Number of extensions: 381355
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)