Os01g0841600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase).
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Os01g0841600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.43 | 0.389 | 10.4 | -1.33 | 0.327 | -0.612 | -1.31 | -1.37 | -0.498 | 23.8 | 73.49 | 3610 | -- | -- |
| 70.52 | 0.391 | 10.4 | -1.43 | 0.334 | -0.622 | -1.22 | -- | -0.526 | 23.9 | 73 | 3624 | -- | -- |
| 75.02 | 0.403 | 10.4 | -1.28 | 0.368 | -0.538 | -- | -1.27 | -0.47 | 22.7 | 74 | 3540 | -- | -- |
| 76.18 | 0.407 | 10.4 | -1.39 | 0.355 | -0.682 | -- | -- | -0.555 | 22.7 | 74.29 | 3633 | -- | -- |
| 82.54 | 0.423 | 10.4 | -1.28 | -- | -0.692 | -- | -0.801 | -0.56 | -- | 73.95 | 3637 | -- | -- |
| 78.46 | 0.415 | 10.3 | -1.44 | 0.408 | -- | -1.1 | -- | -0.41 | 23.2 | -- | -- | -- | -- |
| 82.98 | 0.427 | 10.3 | -1.39 | 0.432 | -- | -- | -- | -0.403 | 22.2 | -- | -- | -- | -- |
| 82.78 | 0.424 | 10.4 | -1.38 | -- | -0.833 | -- | -- | -0.558 | -- | 73.03 | 3694 | -- | -- |
| 123.33 | 0.517 | 10.4 | -- | 0.426 | -0.728 | -- | -- | -0.515 | 21.9 | 74 | 8607 | -- | -- |
| 94.32 | 0.454 | 10.3 | -1.38 | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
| 133.76 | 0.541 | 10.3 | -- | 0.426 | -- | -- | -- | -0.248 | 22 | -- | -- | -- | -- |
| 103.71 | 0.474 | 10.3 | -- | -- | -1.28 | -- | -- | -0.171 | -- | 58.22 | 29683 | -- | -- |
| 144.68 | 0.561 | 10.3 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.98 | humidity | 70.0 | 30 | > th | dose independent | rect. | 19 | 2 |
| 4 | 60.88 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 8 | 61.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 11 | 61.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 15 | 61.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 21 | 61.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 22 | 61.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 42 | 61.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 45 | 61.04 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 54 | 61.18 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 58 | 61.24 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 22 | 21 |
| 74 | 61.78 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 84 | 61.96 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 3 |
| 88 | 62.05 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 89 | 62.05 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 99 | 62.23 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 20 |
| 153 | 62.28 | temperature | 15.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 166 | 62.51 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 170 | 62.58 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 2 |
| 173 | 62.61 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 176 | 62.61 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 178 | 62.61 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 179 | 62.61 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 2 |
| 181 | 62.61 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 2 |
| 187 | 62.61 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 192 | 62.62 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 244 | 62.80 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 285 | 62.82 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 311 | 63.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 343 | 63.53 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 5 |
| 358 | 63.70 | radiation | 40.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 403 | 64.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 410 | 64.28 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 441 | 64.37 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 485 | 64.75 | radiation | 20.0 | 90 | < th | dose independent | rect. | 21 | 21 |
| 489 | 64.78 | radiation | 40.0 | 30 | < th | dose independent | rect. | 23 | 20 |
| 534 | 65.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 2 |
| 535 | 65.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 540 | 65.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 18 | 5 |
| 554 | 65.22 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 599 | 65.41 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 22 |
| 600 | 65.41 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 607 | 65.47 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 4 |
| 716 | 65.80 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 20 |
| 720 | 65.84 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 17 |
| 754 | 66.01 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 12 |
| 800 | 66.24 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 858 | 66.44 | wind | 1.0 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 866 | 66.47 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 20 |
| 986 | 66.79 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 15 |
| 994 | 66.81 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 23 | 17 |