BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0841600 Os01g0841600|AK059805
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0841600 Similar to Triosephosphate isomerase, cytosoli... 474 e-134
Os01g0147900 Triosephosphate isomerase, cytosolic (EC 5.3.1... 397 e-111
Os09g0535000 Similar to Triosephosphate isomerase, chloropl... 295 2e-80
>Os01g0841600 Similar to Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM)
(Triose- phosphate isomerase)
Length = 255
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/255 (92%), Positives = 237/255 (92%)
Query: 1 MAARKFFVGGNWKCNGTGEDVKKIVTVLNEAXXXXXXXXXXXXXXXXXXLPQVKGLLRPD 60
MAARKFFVGGNWKCNGTGEDVKKIVTVLNEA LPQVKGLLRPD
Sbjct: 1 MAARKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPD 60
Query: 61 FSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALS 120
FSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALS
Sbjct: 61 FSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALS 120
Query: 121 QGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATP 180
QGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATP
Sbjct: 121 QGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATP 180
Query: 181 AQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKP 240
AQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKP
Sbjct: 181 AQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKP 240
Query: 241 EFVDIIKSATVKSSA 255
EFVDIIKSATVKSSA
Sbjct: 241 EFVDIIKSATVKSSA 255
>Os01g0147900 Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose-
phosphate isomerase)
Length = 253
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/251 (76%), Positives = 212/251 (84%)
Query: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAXXXXXXXXXXXXXXXXXXLPQVKGLLRPDFSV 63
RKFFVGGNWKCNGT + V KIV +LNE LP VK LRP+ V
Sbjct: 3 RKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQV 62
Query: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
AAQNCWV+KGGAFTGE+SAEMLVNL +PWVILGHSERR+L+GES++FV DK+AYALSQG+
Sbjct: 63 AAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGL 122
Query: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQA 183
KVIAC+GETLEQRE+G+TM+VVAAQTKAI+E+I DWTNVV+AYEPVWAIGTGKVATP QA
Sbjct: 123 KVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQA 182
Query: 184 QEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEFV 243
QEVHDGLRKWL NVS VAESTRIIY GSV GANCKELAAKPDVDGFLVGGASLKPEF+
Sbjct: 183 QEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFI 242
Query: 244 DIIKSATVKSS 254
DII SATVKS+
Sbjct: 243 DIINSATVKSA 253
>Os09g0535000 Similar to Triosephosphate isomerase, chloroplast precursor (EC
5.3.1.1) (TIM) (Triose-phosphate isomerase)
Length = 304
Score = 295 bits (755), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/252 (60%), Positives = 175/252 (69%), Gaps = 3/252 (1%)
Query: 5 KFFVGGNWKCNGTGEDVKKIVTVLNEAXXXXXXXXXXXXXXXXXXLPQVKGLLRPDFSVA 64
KFFVGGNWKCNGT + V K+VT LN A + QVK L V+
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIY--IDQVKNSLTDRIEVS 111
Query: 65 AQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIK 124
AQN W+ KGGA+TGEISAE LV++ WVILGHSERR ++GE F+ K AYALSQ +K
Sbjct: 112 AQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVK 171
Query: 125 VIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQAQ 184
VIACIGE LE+REAG T +V Q KA A+ I++W +VV+AYEPVWAIGTGKVATP QAQ
Sbjct: 172 VIACIGELLEEREAGKTFDVCFKQMKAFADSITNWADVVIAYEPVWAIGTGKVATPEQAQ 231
Query: 185 EVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLK-PEFV 243
EVH +R WL TNVSP VA RIIY GSVN ANC ELA K D+DGFLVGGASLK P+F
Sbjct: 232 EVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFA 291
Query: 244 DIIKSATVKSSA 255
II S T K A
Sbjct: 292 TIINSVTSKKVA 303
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,828,841
Number of extensions: 278003
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)