Os09g0535000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase).
FiT-DB / Search/ Help/ Sample detail
|
Os09g0535000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.95 | 0.39 | 14.5 | -1.83 | 0.0795 | -1.66 | 0.729 | -3.72 | -0.856 | 10.8 | 0.8283 | 1426 | -- | -- |
| 74.38 | 0.402 | 14.5 | -2.18 | 0.15 | -0.861 | 0.669 | -- | -0.942 | 10.1 | 2.438 | 1382 | -- | -- |
| 71 | 0.392 | 14.5 | -1.82 | 0.0776 | -1.62 | -- | -3.6 | -0.861 | 9.69 | 0.8415 | 1437 | -- | -- |
| 74.19 | 0.401 | 14.5 | -2.15 | 0.327 | -0.928 | -- | -- | -0.914 | 9.99 | 2.112 | 2685 | -- | -- |
| 70.62 | 0.391 | 14.5 | -1.8 | -- | -1.65 | -- | -3.76 | -0.853 | -- | 0.84 | 1449 | -- | -- |
| 84.41 | 0.431 | 14.5 | -1.99 | 0.0124 | -- | 0.535 | -- | -0.793 | 9.58 | -- | -- | -- | -- |
| 85.45 | 0.433 | 14.5 | -1.97 | 0.0255 | -- | -- | -- | -0.793 | 5.48 | -- | -- | -- | -- |
| 75.84 | 0.406 | 14.5 | -2.15 | -- | -0.701 | -- | -- | -0.928 | -- | 2.546 | 4295 | -- | -- |
| 164.52 | 0.597 | 14.5 | -- | 0.0475 | -0.805 | -- | -- | -0.907 | 21.4 | 10 | 8746 | -- | -- |
| 85.48 | 0.432 | 14.5 | -1.97 | -- | -- | -- | -- | -0.793 | -- | -- | -- | -- | -- |
| 187.49 | 0.641 | 14.4 | -- | 0.0225 | -- | -- | -- | -0.574 | 12.7 | -- | -- | -- | -- |
| 163.26 | 0.595 | 14.5 | -- | -- | -0.791 | -- | -- | -0.826 | -- | 10 | 8720 | -- | -- |
| 187.52 | 0.639 | 14.4 | -- | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.70 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 2 | 61.74 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 61.74 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 62.09 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 35 | 65.85 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 36 | 65.86 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 39 | 65.98 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 46 | 66.20 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 51 | 66.29 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 52 | 66.30 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 62 | 66.41 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 63 | 66.41 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 69 | 66.49 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 148 | 67.13 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 206 | 67.30 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 217 | 67.32 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 225 | 67.32 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 226 | 67.33 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 227 | 67.33 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 245 | 67.36 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 249 | 67.36 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 266 | 67.38 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 275 | 67.38 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 295 | 67.40 | atmosphere | 1e+03 | 43200 | < th | dose independent | sin | 4 | NA |
| 316 | 67.41 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 353 | 67.43 | atmosphere | 1e+03 | 43200 | > th | dose independent | sin | 4 | NA |
| 429 | 67.47 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 448 | 67.48 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 456 | 67.49 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 464 | 67.49 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 507 | 67.51 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 523 | 67.52 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 540 | 67.53 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 552 | 67.53 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 554 | 67.54 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 624 | 67.57 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 653 | 67.59 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 673 | 67.61 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 681 | 67.62 | atmosphere | 1e+03 | 43200 | < th | dose independent | no | NA | NA |
| 688 | 67.62 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 698 | 67.62 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 784 | 67.65 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 799 | 67.65 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 802 | 67.66 | atmosphere | 1e+03 | 43200 | > th | dose independent | no | NA | NA |
| 806 | 67.66 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 818 | 67.66 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 823 | 67.66 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 14 | 23 |