BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0841600 Os01g0841600|AK059805
(255 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55440.1 | chr3:20553794-20556078 FORWARD LENGTH=255 386 e-108
AT2G21170.1 | chr2:9071047-9073106 REVERSE LENGTH=316 279 9e-76
>AT3G55440.1 | chr3:20553794-20556078 FORWARD LENGTH=255
Length = 254
Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/253 (73%), Positives = 211/253 (83%)
Query: 3 ARKFFVGGNWKCNGTGEDVKKIVTVLNEAXXXXXXXXXXXXXXXXXXLPQVKGLLRPDFS 62
ARKFFVGGNWKCNGT E+VKKIV LNEA LP VK LR DF
Sbjct: 2 ARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFF 61
Query: 63 VAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQG 122
VAAQNCWV+KGGAFTGE+SAEMLVNL +PWVILGHSERRA++ ESS+FV DK+AYAL+QG
Sbjct: 62 VAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQG 121
Query: 123 IKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQ 182
+KVIAC+GETLE+REAG+TM+VVAAQTKAIA+++++W+NVV+AYEPVWAIGTGKVA+PAQ
Sbjct: 122 LKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQ 181
Query: 183 AQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEF 242
AQEVHD LRKWL NVS VA +TRIIY GSVNG NCKEL + DVDGFLVGGASLKPEF
Sbjct: 182 AQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEF 241
Query: 243 VDIIKSATVKSSA 255
+DIIK+A VK SA
Sbjct: 242 IDIIKAAEVKKSA 254
>AT2G21170.1 | chr2:9071047-9073106 REVERSE LENGTH=316
Length = 315
Score = 279 bits (714), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 144/252 (57%), Positives = 170/252 (67%), Gaps = 3/252 (1%)
Query: 5 KFFVGGNWKCNGTGEDVKKIVTVLNEAXXXXXXXXXXXXXXXXXXLPQVKGLLRPDFSVA 64
KFFVGGNWKCNGT + + K+++ LN A + QVK L ++
Sbjct: 65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVY--IDQVKSSLTDRIDIS 122
Query: 65 AQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIK 124
QN WV KGGAFTGEIS E L +L WVILGHSERR ++GE +F+ K AYALS+G+
Sbjct: 123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182
Query: 125 VIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQAQ 184
VIACIGE LE+REAG T +V AQ KA A+ + W N+V+AYEPVWAIGTGKVA+P QAQ
Sbjct: 183 VIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQ 242
Query: 185 EVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLK-PEFV 243
EVH +R WL NVS VA TRIIY GSVNG N ELA + D+DGFLVGGASLK PEF
Sbjct: 243 EVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFA 302
Query: 244 DIIKSATVKSSA 255
I+ S T K A
Sbjct: 303 TIVNSVTSKKVA 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,848,973
Number of extensions: 168985
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)