BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0533400 Os09g0533400|AY129070
(884 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0533400 Peptidase S16, ATP-dependent protease La famil... 1716 0.0
AK119735 502 e-142
Os07g0689300 Peptidase S16, ATP-dependent protease La famil... 470 e-132
AK110129 392 e-109
AK110155 326 5e-89
Os03g0306400 Similar to Lon protease homolog 2, mitochondri... 326 6e-89
>Os09g0533400 Peptidase S16, ATP-dependent protease La family protein
Length = 884
Score = 1716 bits (4445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 855/884 (96%), Positives = 855/884 (96%)
Query: 1 MADAAVELPGRLAILPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQREEKGLIGVLPVH 60
MADAAVELPGRLAILPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQREEKGLIGVLPVH
Sbjct: 1 MADAAVELPGRLAILPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQREEKGLIGVLPVH 60
Query: 61 DSEAAGSLLSPGVGSDSGEGGSKAPGGSAGESTKQDTKNGKETIHWHSRGVAARALHLSR 120
DSEAAGSLLSPGVGSDSGEGGSKAPGGSAGESTKQDTKNGKETIHWHSRGVAARALHLSR
Sbjct: 61 DSEAAGSLLSPGVGSDSGEGGSKAPGGSAGESTKQDTKNGKETIHWHSRGVAARALHLSR 120
Query: 121 GVEKPSGRVTYIVVLEGLCRFSVQELSARGSYHVARVSRLDMTKTELEHAEQDPDLIALS 180
GVEKPSGRVTYIVVLEGLCRFSVQELSARGSYHVARVSRLDMTKTELEHAEQDPDLIALS
Sbjct: 121 GVEKPSGRVTYIVVLEGLCRFSVQELSARGSYHVARVSRLDMTKTELEHAEQDPDLIALS 180
Query: 181 RQFKATAMELISVLEQKQKTVGRTKVLLETVPVYRLADIFVASFEIGFEEQLSMLDSVDL 240
RQFKATAMELISVLEQKQKTVGRTKVLLETVPVYRLADIFVASFEIGFEEQLSMLDSVDL
Sbjct: 181 RQFKATAMELISVLEQKQKTVGRTKVLLETVPVYRLADIFVASFEIGFEEQLSMLDSVDL 240
Query: 241 KVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGXXXXXXX 300
KVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELG
Sbjct: 241 KVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDED 300
Query: 301 XVAALERKMQNAGMPANIWKHAQRELRRLRKMQPQQPGYSSSRTYLELLAELPWQKVSEE 360
VAALERKMQNAGMPANIWKHAQRELRRLRKMQPQQPGYSSSRTYLELLAELPWQKVSEE
Sbjct: 301 DVAALERKMQNAGMPANIWKHAQRELRRLRKMQPQQPGYSSSRTYLELLAELPWQKVSEE 360
Query: 361 RELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASS 420
RELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASS
Sbjct: 361 RELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASS 420
Query: 421 IAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKT 480
IAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKT
Sbjct: 421 IAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKT 480
Query: 481 GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEV 540
GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEV
Sbjct: 481 GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEV 540
Query: 541 IELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVRLIIERYTREAGXXXXXXX 600
IELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVRLIIERYTREAG
Sbjct: 541 IELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVRLIIERYTREAGVRNLERN 600
Query: 601 XXXXXXXXXXXXXXQDSALRLGKEIQPITTTLLDSRLADGGEVEMEVIPMGQDISNTYEN 660
QDSALRLGKEIQPITTTLLDSRLADGGEVEMEVIPMGQDISNTYEN
Sbjct: 601 LAALARAAAVKVAEQDSALRLGKEIQPITTTLLDSRLADGGEVEMEVIPMGQDISNTYEN 660
Query: 661 PSPMIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFGGEVQFVEATAMVGKGD 720
PSPMIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFGGEVQFVEATAMVGKGD
Sbjct: 661 PSPMIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFGGEVQFVEATAMVGKGD 720
Query: 721 LHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGPS 780
LHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGPS
Sbjct: 721 LHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGPS 780
Query: 781 AGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPER 840
AGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPER
Sbjct: 781 AGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPER 840
Query: 841 NMKDLAEVPAPILSGLEILLVKRIEEVLDHAFEGGCPLRPHSKL 884
NMKDLAEVPAPILSGLEILLVKRIEEVLDHAFEGGCPLRPHSKL
Sbjct: 841 NMKDLAEVPAPILSGLEILLVKRIEEVLDHAFEGGCPLRPHSKL 884
>AK119735
Length = 976
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 324/828 (39%), Positives = 455/828 (54%), Gaps = 138/828 (16%)
Query: 133 VVLEGLCRFSVQELSARGSYHVARVSRLDMTKTELEHAE-QDPDLIALSRQFKATAMELI 191
+V+EGL R V ++ Y + +D EH + +P+L+ K + EL+
Sbjct: 175 LVVEGLERVQVLDVVQERPYFEGELCAVD------EHIDVANPELLEQFNLLKQLSRELL 228
Query: 192 -----SVLEQKQKTVGRTKVLLETVPVY----------RLADIFVASFEIGFEEQLSMLD 236
S + + TV + V+ + +Y LAD + EE+L +L
Sbjct: 229 ALVRLSAILPRTPTVTLSPVVARRLELYITRKDLSEAGSLADFMANVVDCTHEEKLRVLA 288
Query: 237 SVDLKVRLSKATELVDRHLQSILVAEKITQKVE---------GQLSKSQKEFLLRQQMRA 287
+VD K R+ + E++ R + +I + +IT QL + Q+E L+R+
Sbjct: 289 AVDAKERVVRVIEILQRQISTIQGSTRITVTTTQVPSGSFDIDQLRRLQQEALVRRGKSG 348
Query: 288 IK------------EELGXXXXXXXXVAALERKMQNAGMPANIWKHAQRELRRLRKMQPQ 335
+ + L++++++A + + K AQREL+RL+KM P
Sbjct: 349 AQGLPGGFPGNFPGGGQQGGEEEANEIEELKKRLEDAKLSPDADKVAQRELQRLQKMNPA 408
Query: 336 QPGYSSSRTYLELLAELPWQKVSEERELD---LRAAKESLDRDHYGLTKVKQRIIEYLAV 392
Q Y R YLE LAE+PW KV+E+ +LD L AK+ LD DHYGL K+K+R++EYLAV
Sbjct: 409 QAEYQVCRNYLENLAEIPWTKVTED-QLDAGTLVKAKKQLDDDHYGLDKIKKRLLEYLAV 467
Query: 393 RKLKPDA-------------------------------------------------RGPV 403
KLK A + P+
Sbjct: 468 LKLKEQANRSIDDQIRALTETPEAEEEAKEQDVDEKVSREPSEQELRLLERKRMVDKSPI 527
Query: 404 LCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 463
L VGPPGVGKTSLA S+A AL RKF RISLGGV+DEA+IRGHRRTY+ +MPG ++ GLK
Sbjct: 528 LLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLVVSGLK 587
Query: 464 RVSVSNPVMLLDEIDKTG-SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 522
+V VSNPV LLDEIDK G S+ GDP++A+LEVLDPEQN TF DHY+N+P DLSKV+F+A
Sbjct: 588 KVGVSNPVFLLDEIDKLGMSNYNGDPSAAMLEVLDPEQNHTFTDHYVNIPIDLSKVLFIA 647
Query: 523 TANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVR 582
TAN + IP PLLDRME I+L GYT EK IA +HLIP+ + +GL+ L IP ++
Sbjct: 648 TANSLDTIPAPLLDRMETIQLSGYTTLEKRAIASRHLIPKQITTNGLAQDNLTIPTDVLD 707
Query: 583 LIIERYTREAGXXXXXXXXXXXXXXXXXXXXXQDSALRLGKEIQPITTTLLDSRLADGGE 642
II YTRE+G L +EI + +
Sbjct: 708 KIITAYTRESGVR------------------------NLEREIGSVCRS---------KA 734
Query: 643 VEMEVIPMGQDISNTYENPSPMIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTS 702
VE +D +NT SP++ E ++ LG +F + E ++ + PGV GLV S
Sbjct: 735 VEYAT---AKD-TNTLAAYSPIVTLED-IDATLGIEKFAE-ELTEQHSRPGVITGLVAYS 788
Query: 703 FGGE--VQFVEATAMVGKGDLHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLL 760
GG+ + F+E M+G G + LTG+LGDV+KES ++ALTWV+A A DL L+ D +++
Sbjct: 789 SGGQGSILFIEIADMLGSGRVQLTGKLGDVLKESVEVALTWVKAHAFDLQLTSRVDEDIM 848
Query: 761 ESRDIHIHFPAGAVPKDGPSAGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGV 820
+SR IH+H P+GA+PKDGPSAG+ +LVSLFS V AMTGE++LRG VLPVGG+
Sbjct: 849 KSRSIHVHCPSGAIPKDGPSAGLAHTVALVSLFSSMPVPPTLAMTGEVSLRGRVLPVGGI 908
Query: 821 KDKVLAAHRYGIKRVILPERNMKDLAEVPAPILSGLEILLVKRIEEVL 868
K+K++ A R G++RV+LPE N KD ++P + GL+I V + E L
Sbjct: 909 KEKLIGALRAGVERVLLPEGNRKDARDLPDEVKQGLKIEFVGWVWEAL 956
>Os07g0689300 Peptidase S16, ATP-dependent protease La family protein
Length = 976
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 290/758 (38%), Positives = 423/758 (55%), Gaps = 72/758 (9%)
Query: 171 EQDPDLIALSRQFKATAMELISVLEQKQKTVGRTKVLLETVPVY-------RLADIFVA- 222
++D D+I KAT+ E+IS L + K K ++T + RLAD A
Sbjct: 228 DKDDDVI------KATSFEVISTLREVLKASSLWKDHVQTYTQHMGDFNYPRLADFGAAI 281
Query: 223 SFEIGFEEQLSMLDSVDLKVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLR 282
S F Q +L+ +D+ RL ELV + ++ + + I + +E ++S Q+ +LL
Sbjct: 282 SGANKFLCQ-EVLEELDVYKRLKLTLELVKKEMEISKLQQSIAKAIEEKISGDQRRYLLN 340
Query: 283 QQMRAIKEELGXXXXXXXXVAALERKMQNAG---MPANIWKHAQRELRRLRKMQPQQPGY 339
+Q++AIK+ELG ++A R+ A PA++ + + EL +L+ ++ +
Sbjct: 341 EQLKAIKKELGLETDDKTALSAKFRERIEAKKEKCPAHVLQVIEEELTKLQLLEASSSEF 400
Query: 340 SSSRTYLELLAELPWQKVSEERELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDA 399
+ +R YL+ L LPW S+E D+ A++ LD DHYGL+ VK+RI+E++AV KL+ +
Sbjct: 401 NVTRNYLDWLTVLPWGNYSDEN-FDVHHAQQILDEDHYGLSDVKERILEFIAVGKLRGTS 459
Query: 400 RGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLI 459
+G ++C GPPGVGKTS+ SIA+ALNRKF R S+GG+ D A+I+GHRRTY+G+MPG+++
Sbjct: 460 QGKIICLSGPPGVGKTSIGRSIARALNRKFYRFSVGGLADVAEIKGHRRTYVGAMPGKMV 519
Query: 460 DGLKRVSVSNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 519
LK V +NP++L+DEIDK G GDPASALLE+LDPEQN F DHYL+VP DLSKV+
Sbjct: 520 QCLKSVGTANPLVLIDEIDKLGRGHSGDPASALLELLDPEQNVNFLDHYLDVPIDLSKVL 579
Query: 520 FVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEA 579
FV TAN ++ IP PLLDRME+I + GY +EK+ IA +L E G+ ++ +A
Sbjct: 580 FVCTANVIEMIPNPLLDRMEIIAIAGYITDEKMHIARDYLEKNTREACGIKPEQAEVTDA 639
Query: 580 MVRLIIERYTREAGXXXXXXXXXXXXXXXXXXXXXQ----------------------DS 617
+ +IE Y REAG Q DS
Sbjct: 640 ALLALIESYCREAGVRNLQKQIEKIYRKIALQLVRQGVSNEPTQEAAIVTASEEPNGGDS 699
Query: 618 ALRLGKEI--QPIT----TTLLDSRLADGGEVEMEVIPMGQDISNTYENPSPMIVDEAML 671
A +L E P T T D+ + E+++ + D + E D+A +
Sbjct: 700 ANKLKDETMEDPATENAAMTNADTASKEASELDLLNRTVDHDGNKDMEGAKEESADKA-V 758
Query: 672 EKVLGPPRFDDSEAADRVASP-------------GVSVGLVWTSFGGEVQFVEATAMV-- 716
EKV+ D S D V P GV +GL WT+ GG ++E T +
Sbjct: 759 EKVV----IDSSNLGDYVGKPVFQAERIYEQTPVGVVMGLAWTAMGGSTLYIETTKVEEG 814
Query: 717 -GKGDLHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVP 775
GKG L +TGQLGDV+KESAQ+A T RA L+ P + + +H+H PAG+ P
Sbjct: 815 DGKGALVMTGQLGDVMKESAQIAHTV--GRAILLDKEPEN--LFFANSKVHLHVPAGSTP 870
Query: 776 KDGPSAGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRV 835
KDGPSAG T++TS++SL + V+ D AMTGE+TL G +LP+GGVK+K +AA R +K +
Sbjct: 871 KDGPSAGCTMITSMLSLAMGKPVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSAVKTI 930
Query: 836 ILPERNMKDLAEVPAPILSGLEILLVKRIEEVLDHAFE 873
+ P N +D E+ + GLE+ V E+ D AF+
Sbjct: 931 VFPAANKRDFDELAPNVKEGLEVHFVDTYNEIFDIAFQ 968
>AK110129
Length = 1140
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/480 (45%), Positives = 307/480 (63%), Gaps = 43/480 (8%)
Query: 400 RGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLI 459
+GP+L VGPPG GKTS+A S+A AL R F R+SLGGV+DEA+IRGHRRTY+G+MPG ++
Sbjct: 658 KGPILLLVGPPGTGKTSIAKSLASALQRPFTRLSLGGVRDEAEIRGHRRTYVGAMPGSIV 717
Query: 460 DGLKRVSVSNPVMLLDEIDK--TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 517
L++V VS+PV+LLDE+DK +G+ + GDP +A+LEVLDPEQN TF+DHY+NVP DLS+
Sbjct: 718 SSLRKVGVSDPVILLDEVDKLGSGNGLHGDPMAAMLEVLDPEQNHTFSDHYVNVPIDLSR 777
Query: 518 VIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIP 577
V+F+ATAN + I PPLLDR EVI + GYT +EK IA ++L+P+ ++ GL+ L +
Sbjct: 778 VLFIATANSLDTISPPLLDRTEVIHISGYTHDEKTAIARQYLLPKQIKAQGLAPDQLVVS 837
Query: 578 EAMVRLIIERYTREAGXXXXXXXXXXXXXXXXXXXXXQDSALRLGKEIQPITTTLLDSRL 637
+ ++ + YTREAG L +EI L
Sbjct: 838 DDVLLKVAMGYTREAGVRT------------------------LEREI---------GAL 864
Query: 638 ADGGEVEMEVIPMG--QDISNTYENPSPMIVDEAMLEKVLGPPRFDDSEAADRVASPGVS 695
A VE G +D + + P ++ EA LEK LGP + + E A+ A PGVS
Sbjct: 865 ARAKAVEYSQSKKGTLRDDNGQPKQYDP-VIREADLEKYLGPDTY-EPEVAEANARPGVS 922
Query: 696 VGLVWTSFG-GEVQFVEATAM-VGKGDLHLTGQLGDVIKESAQLALTWVRARAADLNLSP 753
GL + G G + +E+ + G G L LTG LGDVI+ESA+LAL+WV+ A L +
Sbjct: 923 TGLAYQGSGSGGILHIESLLLPPGSGYLKLTGSLGDVIRESAELALSWVKGNAFQLGIVR 982
Query: 754 TSDINLLESRDIHIHFPAGAVPKDGPSAGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGL 813
T D ++ DIH+H P+GA+PKDGPSAGV + +LVSL + + AMTGE+TLRG+
Sbjct: 983 TRDSEFPKN-DIHLHLPSGAIPKDGPSAGVAMTCALVSLLTKTPISPYLAMTGEVTLRGV 1041
Query: 814 VLPVGGVKDKVLAAHRYGIKRVILPERNMKDL-AEVPAPILSGLEILLVKRIEEVLDHAF 872
V+PVGG+++K+ AA R GI++V+LP RN KD+ +++P + LEI VK + E ++ AF
Sbjct: 1042 VMPVGGIREKLTAASRAGIRKVLLPHRNRKDVESDLPKKVRDELEIKYVKTVWEAMEAAF 1101
>AK110155
Length = 1220
Score = 326 bits (836), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 244/381 (64%), Gaps = 4/381 (1%)
Query: 215 RLADIFVASFEIGFEEQL-SMLDSVDLKVRLSKATELVDRHLQSILVAEKITQKVEGQLS 273
+LAD F A+ G +L ++L+++D++ RL KA ++ + L + + KI++ VE ++
Sbjct: 468 KLAD-FAAAVSTGEVSELQAVLEALDVRERLQKALVVLKKELMNAQLQSKISKDVESKIQ 526
Query: 274 KSQKEFLLRQQMRAIKEELGXXXX-XXXXVAALERKMQNAGMPANIWKHAQRELRRLRKM 332
K Q+E+ L +Q++ IK+ELG + K MP + K EL +L+ +
Sbjct: 527 KRQREYYLMEQLKGIKKELGIESDGKDKMIEKFREKAAELRMPEAVRKVFDEELNKLQTL 586
Query: 333 QPQQPGYSSSRTYLELLAELPWQKVSEERELDLRAAKESLDRDHYGLTKVKQRIIEYLAV 392
+P ++ +R YL+ L +PW S E + A LD DHYGL VK RI+E+LAV
Sbjct: 587 EPAASEFNVTRGYLDWLTSIPWGVHSPEN-YSISNATSVLDEDHYGLKDVKDRILEFLAV 645
Query: 393 RKLKPDARGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIG 452
KLK G ++C VGPPGVGKTS+ SIA+A+ R+F R S+GG+ D A+I+GHRRTY+G
Sbjct: 646 GKLKGTVEGKIICLVGPPGVGKTSIGKSIARAVERQFFRFSVGGLSDVAEIKGHRRTYVG 705
Query: 453 SMPGRLIDGLKRVSVSNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 512
+MPG+ I LK+V NP++L+DE+DK G GDP+SALLE+LDPEQN +F DHY++VP
Sbjct: 706 AMPGKTIQALKKVGTENPLILIDEVDKIGRGHNGDPSSALLEMLDPEQNGSFLDHYMDVP 765
Query: 513 FDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSST 572
DLS+V+FV TAN + IP PLLDRMEV+E+ YT +EK IA +L P+ E GL
Sbjct: 766 VDLSRVLFVCTANTLDTIPQPLLDRMEVMEVSSYTADEKRHIARGYLGPQAKEASGLQDA 825
Query: 573 YLQIPEAMVRLIIERYTREAG 593
+ +P+ + +I+ + RE+G
Sbjct: 826 NIVLPDETIDFLIKHHARESG 846
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 135/207 (65%), Gaps = 2/207 (0%)
Query: 671 LEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFG-GEVQFVEATAMVGKGDLHLTGQLGD 729
L K LGPP + GVS GL + G G + +E T M GKG L LTG+LGD
Sbjct: 974 LRKYLGPPVYHKDRLYTSAMPAGVSTGLGYLGNGSGSLMPIETTIMPGKGSLQLTGKLGD 1033
Query: 730 VIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGPSAGVTLVTSL 789
VIKESA +AL+W++ A DL + ++ +LLE++D+H+H P GA+ K+GPSAGV L
Sbjct: 1034 VIKESASIALSWMKTNAFDLGIVKDANDSLLENKDVHLHMPEGAIGKEGPSAGVAFTVPL 1093
Query: 790 VSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPERNMKDL-AEV 848
SL ++R V AMTGE++LRG+VLPVGG+K+K+LAAHR GI +VILP +N ++ A+V
Sbjct: 1094 TSLLTNRSVAPTLAMTGEVSLRGMVLPVGGLKEKLLAAHRAGITKVILPAQNQPNVEADV 1153
Query: 849 PAPILSGLEILLVKRIEEVLDHAFEGG 875
P +L LE+ V + L+HAF G
Sbjct: 1154 PKAVLDDLEVHYVNNVWSALNHAFGEG 1180
>Os03g0306400 Similar to Lon protease homolog 2, mitochondrial precursor (EC
3.4.21.-)
Length = 948
Score = 326 bits (835), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 162/362 (44%), Positives = 238/362 (65%), Gaps = 4/362 (1%)
Query: 235 LDSVDLKVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGX 294
+D + + RL ELV R L+ + + I + +E +++ Q+ +LL +Q++AIK+ELG
Sbjct: 231 VDHLKVSKRLMLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGL 290
Query: 295 XXXXXXXVAALERK---MQNAGMPANIWKHAQRELRRLRKMQPQQPGYSSSRTYLELLAE 351
++ RK + P++I + + EL +L+ ++ +S + YL+ L
Sbjct: 291 ETDDKTALSEKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTV 350
Query: 352 LPWQKVSEERELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPG 411
LPW S+E D+ A+ LD DHYGLT VK+RI+E++AV KL+ ++G ++C GPPG
Sbjct: 351 LPWGDYSDEN-FDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPG 409
Query: 412 VGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPV 471
VGKTS+ S+A+ALNRKF R S+GG+ D A+I+GHRRTY+G+MPG+++ LK V SNP+
Sbjct: 410 VGKTSIGRSVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPL 469
Query: 472 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIP 531
+L+DEIDK G GDPASALLE+LDPEQN F DHYL+VP DLSKV+FV TAN ++ IP
Sbjct: 470 VLIDEIDKLGRGYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIP 529
Query: 532 PPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVRLIIERYTRE 591
PLLDRME+I + GY +EK+ IA +L E G+ +++ ++ + +IE Y RE
Sbjct: 530 GPLLDRMEIITIAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCRE 589
Query: 592 AG 593
AG
Sbjct: 590 AG 591
Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 664 MIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFGGEVQFVEATAMV----GKG 719
++VD + L+ +G F D+ GV +GL W + GG ++E TA V KG
Sbjct: 733 VVVDASNLDNFVGKAVFQPERIYDQTPV-GVVMGLAWNAMGGSTLYIE-TAKVEDGEKKG 790
Query: 720 DLHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGP 779
L +TGQLGDV+KESAQ+A T R+ + + T +H+H PAGA PKDGP
Sbjct: 791 ALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNT----FFTKSKLHLHVPAGATPKDGP 846
Query: 780 SAGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPE 839
SAG T+VTS++SL + V+ D AMTGE+TL G +LP+GGVK+K +AA R GIK +I P
Sbjct: 847 SAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIKTIIFPA 906
Query: 840 RNMKDLAEVPAPILSGLEILLVKRIEEVLDHAF 872
N +D E+ + GLE+ V + E+ D AF
Sbjct: 907 ANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAF 939
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,896,152
Number of extensions: 1248575
Number of successful extensions: 5310
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 5288
Number of HSP's successfully gapped: 12
Length of query: 884
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 774
Effective length of database: 11,292,261
Effective search space: 8740210014
Effective search space used: 8740210014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)