Os09g0533400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S16, ATP-dependent protease La family protein.
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Os09g0533400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S16, ATP-dependent protease La family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.97 | 0.345 | 12.3 | 0.772 | 0.817 | -1.04 | 0.539 | 2.25 | 0.339 | 17.3 | 25.19 | 1209 | -- | -- |
| 56.93 | 0.351 | 12.3 | 0.284 | 0.783 | -0.786 | 0.435 | -- | 0.28 | 17.1 | 25.1 | 1231 | -- | -- |
| 54.53 | 0.344 | 12.3 | 0.754 | 0.819 | -1.01 | -- | 2.18 | 0.325 | 17.1 | 25.52 | 1246 | -- | -- |
| 55.87 | 0.348 | 12.4 | 0.206 | 0.821 | -0.784 | -- | -- | 0.164 | 17.1 | 26 | 1233 | -- | -- |
| 88.42 | 0.438 | 12.3 | 0.789 | -- | -1.15 | -- | 2.1 | 0.377 | -- | 24.42 | 1258 | -- | -- |
| 78.82 | 0.416 | 12.4 | -0.0409 | 0.899 | -- | 0.41 | -- | 0.116 | 16.7 | -- | -- | -- | -- |
| 79.24 | 0.417 | 12.4 | -0.0383 | 0.901 | -- | -- | -- | 0.118 | 16.6 | -- | -- | -- | -- |
| 90.07 | 0.442 | 12.4 | 0.225 | -- | -0.923 | -- | -- | 0.203 | -- | 25 | 1264 | -- | -- |
| 56.87 | 0.351 | 12.4 | -- | 0.822 | -0.729 | -- | -- | 0.128 | 17 | 26.3 | 1231 | -- | -- |
| 122.5 | 0.517 | 12.4 | -0.0731 | -- | -- | -- | -- | 0.0947 | -- | -- | -- | -- | -- |
| 79.27 | 0.416 | 12.4 | -- | 0.902 | -- | -- | -- | 0.123 | 16.6 | -- | -- | -- | -- |
| 91.32 | 0.445 | 12.4 | -- | -- | -0.87 | -- | -- | 0.166 | -- | 25.19 | 1263 | -- | -- |
| 122.64 | 0.517 | 12.4 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 2 | 54.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 4 | 54.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 23 | 54.78 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 47 | 54.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 54 | 54.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 139 | 55.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 177 | 55.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 180 | 55.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 219 | 55.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 225 | 55.32 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 321 | 56.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 328 | 56.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 366 | 57.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 382 | 57.20 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 422 | 57.47 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 456 | 57.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 515 | 57.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 571 | 58.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 594 | 58.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 612 | 58.24 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 675 | 58.44 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 676 | 58.44 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 682 | 58.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 683 | 58.45 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 702 | 58.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 711 | 58.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 712 | 58.51 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 721 | 58.53 | humidity | 90 | 1440 | < th | dose dependent | sin | 19 | NA |
| 724 | 58.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 729 | 58.55 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 742 | 58.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 804 | 58.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 826 | 58.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 841 | 58.71 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 846 | 58.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 847 | 58.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 864 | 58.75 | temperature | 30 | 1440 | < th | dose independent | sin | 3 | NA |
| 881 | 58.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 883 | 58.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 884 | 58.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 901 | 58.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 952 | 58.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 955 | 58.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 960 | 58.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 987 | 58.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 999 | 58.86 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |