FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0306400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lon protease homolog 2, mitochondrial precursor (EC 3.4.21.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0266) R2 : 0.598
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.97 (0.125) R2dC : 1.8 R2C : -1.33
β3 : -2.93 (0.12) R2dE : 1.88 R2E : -1.21
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.28 (0.0554) R2dN8 : 0.0299 R2N8 : 0.0232
σ : 0.493
deviance : 112.24
__
_____
C
peak time of C : 20.6
E
wheather : radiation
threshold : 17.18
memory length : 143
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.46 0.492 3.6 0.36 2.77 -2.69 -0.122 -0.23 0.356 20.4 11.16 117 10.6 --
109.14 0.487 3.6 0.329 2.83 -2.76 -0.439 -- 0.347 20.5 12.5 126 10.6 --
109.1 0.486 3.6 0.343 2.87 -2.8 -- -0.324 0.34 20.7 13.59 126 10.3 --
109.54 0.487 3.61 0.338 2.88 -2.81 -- -- 0.341 20.6 13.77 131 10.5 --
157.98 0.585 3.54 0.357 -- -1.98 -- -1.04 0.297 -- 30.28 959 11.5 --
176.43 0.623 3.52 0.419 1.27 -- 0.618 -- 0.426 16.2 -- -- -- --
177.5 0.624 3.52 0.426 1.27 -- -- -- 0.43 16.2 -- -- -- --
156.79 0.583 3.53 0.355 -- -2.26 -- -- 0.307 -- 9.661 940 12.5 --
112.24 0.493 3.62 -- 2.97 -2.93 -- -- 0.28 20.6 17.18 143 10.6 --
265.41 0.761 3.52 0.375 -- -- -- -- 0.396 -- -- -- -- --
182.28 0.632 3.53 -- 1.27 -- -- -- 0.382 16.2 -- -- -- --
159.94 0.589 3.54 -- -- -2.27 -- -- 0.278 -- 6.41 953 13.1 --
269.12 0.766 3.52 -- -- -- -- -- 0.354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.24 temperature 15.0 270 > th dose dependent rect. 11 5
2 105.75 temperature 20.0 270 > th dose dependent rect. 12 3
5 107.61 temperature 25.0 90 > th dose independent rect. 13 5
13 109.25 radiation 1.0 90 > th dose independent rect. 13 16
14 109.27 radiation 1.0 90 > th dose independent rect. 13 6
26 109.59 temperature 25.0 270 > th dose independent rect. 12 3
41 110.49 humidity 80.0 270 < th dose independent rect. 12 3
48 111.08 radiation 10.0 270 > th dose independent rect. 12 3
49 111.20 radiation 1.0 270 > th dose dependent rect. 12 4
50 111.40 radiation 10.0 90 < th dose dependent sin 16 NA
52 111.51 radiation 1.0 90 > th dose independent sin 17 NA
78 113.06 radiation 1.0 90 < th dose independent sin 17 NA
89 113.65 radiation 1.0 270 > th dose dependent rect. 12 17
107 114.20 humidity 80.0 270 < th dose independent rect. 11 5
135 114.74 humidity 90.0 270 < th dose dependent rect. 12 3
136 114.78 wind 7.0 270 < th dose independent rect. 12 3
155 115.09 radiation 1.0 90 > th dose dependent sin 14 NA
176 115.44 humidity 50.0 270 > th dose independent rect. 16 19
177 115.50 wind 7.0 270 < th dose independent rect. 11 5
255 117.44 precipitation 0.1 270 < th dose independent rect. 11 5
256 117.44 precipitation 0.1 270 < th dose dependent rect. 11 5
285 117.91 temperature 10.0 270 > th dose independent rect. 11 5
286 117.91 atmosphere 1015.0 270 < th dose independent rect. 11 5
287 117.91 temperature 10.0 270 > th dose independent rect. 16 19
292 117.99 precipitation 0.1 270 < th dose independent rect. 12 3
293 117.99 precipitation 0.1 270 < th dose dependent rect. 12 3
310 118.07 atmosphere 995.0 270 > th dose independent rect. 16 19
316 118.18 humidity 90.0 90 < th dose dependent rect. 12 6
339 118.47 atmosphere 1010.0 270 < th dose independent rect. 12 3
340 118.51 temperature 10.0 270 > th dose independent rect. 12 3
343 118.51 temperature 10.0 270 > th dose independent rect. 15 21
347 118.64 wind 9.0 270 < th dose independent rect. 16 19
387 119.25 radiation 1.0 270 > th dose dependent sin 17 NA
388 119.26 atmosphere 995.0 270 > th dose independent rect. 12 3
452 120.01 atmosphere 995.0 270 > th dose independent rect. 11 5
454 120.07 wind 1.0 270 > th dose independent rect. 11 5
464 120.31 wind 9.0 270 < th dose independent rect. 15 21
490 120.53 humidity 90.0 10 < th dose independent rect. 12 7
494 120.57 radiation 20.0 270 < th dose independent rect. 15 8
510 120.87 atmosphere 995.0 270 > th dose independent rect. 15 21
520 121.12 radiation 40.0 270 < th dose dependent sin 18 NA
526 121.17 wind 1.0 270 > th dose independent rect. 12 3
559 121.52 radiation 30.0 270 > th dose independent sin 15 NA
598 122.01 radiation 30.0 270 < th dose independent sin 15 NA
640 122.21 radiation 10.0 90 < th dose dependent rect. 16 9
645 122.35 precipitation 0.1 270 < th dose independent rect. 16 19
646 122.35 precipitation 0.1 270 < th dose dependent rect. 16 19
689 122.97 radiation 40.0 270 < th dose dependent rect. 15 8
715 123.09 humidity 50.0 270 > th dose independent rect. 12 3
732 123.42 radiation 1.0 90 < th dose independent rect. 13 12
736 123.47 radiation 1.0 90 < th dose independent rect. 10 15
737 123.47 precipitation 0.1 270 < th dose independent rect. 12 15
738 123.47 precipitation 0.1 270 < th dose dependent rect. 12 15
783 123.79 wind 9.0 270 < th dose independent rect. 12 15
847 124.04 precipitation 0.1 270 < th dose independent rect. 15 21
848 124.04 precipitation 0.1 270 < th dose dependent rect. 15 21
860 124.21 wind 9.0 270 < th dose dependent rect. 13 2
861 124.22 radiation 10.0 90 < th dose dependent rect. 10 15
967 125.13 atmosphere 995.0 270 > th dose dependent rect. 12 3