BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0306400 Os03g0306400|AY183658
(948 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0306400 Similar to Lon protease homolog 2, mitochondri... 1766 0.0
Os07g0689300 Peptidase S16, ATP-dependent protease La famil... 1112 0.0
AK110155 612 e-175
Os09g0533400 Peptidase S16, ATP-dependent protease La famil... 335 1e-91
AK119735 277 3e-74
AK110129 247 3e-65
>Os03g0306400 Similar to Lon protease homolog 2, mitochondrial precursor (EC
3.4.21.-)
Length = 948
Score = 1766 bits (4575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/948 (92%), Positives = 874/948 (92%)
Query: 1 MLRAAAATTAGFXXXXXXXXXXXXXXXXXXXXXXXXSSPLLRALGVPRGGAGIGSATPGR 60
MLRAAAATTAGF SSPLLRALGVPRGGAGIGSATPGR
Sbjct: 1 MLRAAAATTAGFLPPRLAAETAPAARVVAAAGAEVRSSPLLRALGVPRGGAGIGSATPGR 60
Query: 61 RMYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAIIRPEDCHTVIALPLP 120
RMYF VAPAIIRPEDCHTVIALPLP
Sbjct: 61 RMYFASGSDSSGSAADSDSEASSAAGAGEEESEGNRSSSAVAPAIIRPEDCHTVIALPLP 120
Query: 121 HQPLFPGFFMAMSVKDPKLLKALVENHKRSFPYAGAFLVKNEEDTDSNTVTRSDPKKSIX 180
HQPLFPGFFMAMSVKDPKLLKALVENHKRSFPYAGAFLVKNEEDTDSNTVTRSDPKKSI
Sbjct: 121 HQPLFPGFFMAMSVKDPKLLKALVENHKRSFPYAGAFLVKNEEDTDSNTVTRSDPKKSIH 180
Query: 181 XXXXXXXXXXXXXIGTLAKITSIQGDQVLLLGHCRLRITEMVEEDPLTVKVDHLKVSKRL 240
IGTLAKITSIQGDQVLLLGHCRLRITEMVEEDPLTVKVDHLKVSKRL
Sbjct: 181 GLKGKELLKHLHEIGTLAKITSIQGDQVLLLGHCRLRITEMVEEDPLTVKVDHLKVSKRL 240
Query: 241 MLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGLETDDKTALSE 300
MLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGLETDDKTALSE
Sbjct: 241 MLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGLETDDKTALSE 300
Query: 301 KFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTVLPWGDYSDEN 360
KFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTVLPWGDYSDEN
Sbjct: 301 KFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTVLPWGDYSDEN 360
Query: 361 FDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGRSVA 420
FDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGRSVA
Sbjct: 361 FDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGRSVA 420
Query: 421 RALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDKLGR 480
RALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDKLGR
Sbjct: 421 RALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDKLGR 480
Query: 481 GYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIPGPLLDRMEIIT 540
GYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIPGPLLDRMEIIT
Sbjct: 481 GYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIPGPLLDRMEIIT 540
Query: 541 IAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCREAGVRNLQKQIE 600
IAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCREAGVRNLQKQIE
Sbjct: 541 IAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCREAGVRNLQKQIE 600
Query: 601 KVYRKIALQLVRQGVSNEPAREITLVEPSEQPTGVSIATEVENKSQRDSLAEDVSVHVIP 660
KVYRKIALQLVRQGVSNEPAREITLVEPSEQPTGVSIATEVENKSQRDSLAEDVSVHVIP
Sbjct: 601 KVYRKIALQLVRQGVSNEPAREITLVEPSEQPTGVSIATEVENKSQRDSLAEDVSVHVIP 660
Query: 661 TDFSCEKINVVSLTTKSEVDHYEHPKGVSKETSADDKATPTNTSGKMEANEHTEEVMEAL 720
TDFSCEKINVVSLTTKSEVDHYEHPKGVSKETSADDKATPTNTSGKMEANEHTEEVMEAL
Sbjct: 661 TDFSCEKINVVSLTTKSEVDHYEHPKGVSKETSADDKATPTNTSGKMEANEHTEEVMEAL 720
Query: 721 VDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQTPVGVVMGLAWNAMGGSTLYIET 780
VDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQTPVGVVMGLAWNAMGGSTLYIET
Sbjct: 721 VDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQTPVGVVMGLAWNAMGGSTLYIET 780
Query: 781 AKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNTFFTKSKLHLHVPAGA 840
AKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNTFFTKSKLHLHVPAGA
Sbjct: 781 AKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNTFFTKSKLHLHVPAGA 840
Query: 841 TPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIK 900
TPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIK
Sbjct: 841 TPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIK 900
Query: 901 TIIFPAANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAFPSDSQALAS 948
TIIFPAANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAFPSDSQALAS
Sbjct: 901 TIIFPAANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAFPSDSQALAS 948
>Os07g0689300 Peptidase S16, ATP-dependent protease La family protein
Length = 976
Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/718 (76%), Positives = 618/718 (86%), Gaps = 34/718 (4%)
Query: 231 VDHLKVSKRLMLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGL 290
++ L V KRL LTLELVK+E+EI+KLQQSIAKAIEEK++G+QRRYLLNEQLKAIKKELGL
Sbjct: 293 LEELDVYKRLKLTLELVKKEMEISKLQQSIAKAIEEKISGDQRRYLLNEQLKAIKKELGL 352
Query: 291 ETDDKTALSEKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTV 350
ETDDKTALS KFR+RIE++KEKCP+H+LQVIEEELTKLQLLEASSSEF+VT NYLDWLTV
Sbjct: 353 ETDDKTALSAKFRERIEAKKEKCPAHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTV 412
Query: 351 LPWGDYSDENFDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGV 410
LPWG+YSDENFDV AQ+ILDEDHYGL+DVKERILEFIAVGKLRG+SQGKIICL GPPGV
Sbjct: 413 LPWGNYSDENFDVHHAQQILDEDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGV 472
Query: 411 GKTSIGRSVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLV 470
GKTSIGRS+ARALNRKFYRFSVGGL+D+AEIKGHRRTYVGAMPGKMVQCLKSVGT+NPLV
Sbjct: 473 GKTSIGRSIARALNRKFYRFSVGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLV 532
Query: 471 LIDEIDKLGRGYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIPG 530
LIDEIDKLGRG+SGDPASALLELLDPEQN NFLDHYLDVPIDLSKVLFVCTANVIEMIP
Sbjct: 533 LIDEIDKLGRGHSGDPASALLELLDPEQNVNFLDHYLDVPIDLSKVLFVCTANVIEMIPN 592
Query: 531 PLLDRMEIITIAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCREA 590
PLLDRMEII IAGYITDEKMHIARDYLEKNTREACGI PEQ EVTD+ALLALIE+YCREA
Sbjct: 593 PLLDRMEIIAIAGYITDEKMHIARDYLEKNTREACGIKPEQAEVTDAALLALIESYCREA 652
Query: 591 GVRNLQKQIEKVYRKIALQLVRQGVSNEPAREITLVEPSEQPTGVSIATEVENKSQRDSL 650
GVRNLQKQIEK+YRKIALQLVRQGVSNEP +E +V SE+P G A ++++++ D
Sbjct: 653 GVRNLQKQIEKIYRKIALQLVRQGVSNEPTQEAAIVTASEEPNGGDSANKLKDETMEDPA 712
Query: 651 AEDVSVHVIPTDFSCEKINVVSLTTKSEVDHYEHPKGVSKETSADDKATPTNTSGKMEAN 710
E+ + + D + ++ + + L ++ VDH + N
Sbjct: 713 TENAA--MTNADTASKEASELDLLNRT-VDH--------------------------DGN 743
Query: 711 EHTEEVMEALVDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQTPVGVVMGLAWNA 770
+ ME +E+ DK VEKVV+D+SNL ++VGK VFQ ERIY+QTPVGVVMGLAW A
Sbjct: 744 KD----MEGAKEES-ADKAVEKVVIDSSNLGDYVGKPVFQAERIYEQTPVGVVMGLAWTA 798
Query: 771 MGGSTLYIETAKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNTFFTKS 830
MGGSTLYIET KVE+G+ KGALV+TGQLGDVMKESAQIAHT+ R+IL +KEP N FF S
Sbjct: 799 MGGSTLYIETTKVEEGDGKGALVMTGQLGDVMKESAQIAHTVGRAILLDKEPENLFFANS 858
Query: 831 KLHLHVPAGATPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEK 890
K+HLHVPAG+TPKDGPSAGCTM+TSMLSLAMGK VKKDLAMTGEVTLTGRILPIGGVKEK
Sbjct: 859 KVHLHVPAGSTPKDGPSAGCTMITSMLSLAMGKPVKKDLAMTGEVTLTGRILPIGGVKEK 918
Query: 891 TIAARRSGIKTIIFPAANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAFPSDSQALAS 948
TIAARRS +KTI+FPAAN+RDFDELAPNVKEGLEVHFVD Y+EI+D+AF S++Q S
Sbjct: 919 TIAARRSAVKTIVFPAANKRDFDELAPNVKEGLEVHFVDTYNEIFDIAFQSETQTETS 976
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 38 SPLLRALGVPRGGAGIGSATPGRRMYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 97
SPLLR LG RGG +T GRR F
Sbjct: 30 SPLLRVLGALRGGR---VSTLGRRARFCSNSAGSDSEAAAAEAKAEDAVAAEGEADGKAS 86
Query: 98 XXXVAPAIIRPEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALVENHKRSFPYAGAF 157
V P ++RPEDC +VIALPLPH+PLFPGF+M + VKD KLL+ALVEN KRS PYAGAF
Sbjct: 87 SAIV-PTVLRPEDCLSVIALPLPHRPLFPGFYMPIYVKDQKLLQALVENRKRSIPYAGAF 145
Query: 158 LVKNEEDTDSNTVTRSDPKKSIXXXXXXXXXXXXXXIGTLAKITSIQGDQVLLLGHCRLR 217
LVK+EE TD N VT SD KSI +GTLA+ITSIQGDQV+LLGH RL+
Sbjct: 146 LVKDEEGTDPNIVTSSDSDKSIDDLKGKELLQRLNEVGTLAQITSIQGDQVVLLGHRRLK 205
Query: 218 ITEMVEEDPLTVKVDHLK 235
ITEMV+EDPLTVKVDHLK
Sbjct: 206 ITEMVQEDPLTVKVDHLK 223
>AK110155
Length = 1220
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 332/720 (46%), Positives = 453/720 (62%), Gaps = 33/720 (4%)
Query: 227 LTVKVDHLKVSKRLMLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKK 286
L ++ L V +RL L ++K+EL +LQ I+K +E K+ QR Y L EQLK IKK
Sbjct: 484 LQAVLEALDVRERLQKALVVLKKELMNAQLQSKISKDVESKIQKRQREYYLMEQLKGIKK 543
Query: 287 ELGLETDDKTALSEKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLD 346
ELG+E+D K + EKFR++ + + + P + +V +EEL KLQ LE ++SEF+VT YLD
Sbjct: 544 ELGIESDGKDKMIEKFREK--AAELRMPEAVRKVFDEELNKLQTLEPAASEFNVTRGYLD 601
Query: 347 WLTVLPWGDYSDENFDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCG 406
WLT +PWG +S EN+ + A +LDEDHYGL DVK+RILEF+AVGKL+G+ +GKIICL G
Sbjct: 602 WLTSIPWGVHSPENYSISNATSVLDEDHYGLKDVKDRILEFLAVGKLKGTVEGKIICLVG 661
Query: 407 PPGVGKTSIGRSVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTS 466
PPGVGKTSIG+S+ARA+ R+F+RFSVGGLSD+AEIKGHRRTYVGAMPGK +Q LK VGT
Sbjct: 662 PPGVGKTSIGKSIARAVERQFFRFSVGGLSDVAEIKGHRRTYVGAMPGKTIQALKKVGTE 721
Query: 467 NPLVLIDEIDKLGRGYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIE 526
NPL+LIDE+DK+GRG++GDP+SALLE+LDPEQN +FLDHY+DVP+DLS+VLFVCTAN ++
Sbjct: 722 NPLILIDEVDKIGRGHNGDPSSALLEMLDPEQNGSFLDHYMDVPVDLSRVLFVCTANTLD 781
Query: 527 MIPGPLLDRMEIITIAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENY 586
IP PLLDRME++ ++ Y DEK HIAR YL +EA G+ + + D + LI+++
Sbjct: 782 TIPQPLLDRMEVMEVSSYTADEKRHIARGYLGPQAKEASGLQDANIVLPDETIDFLIKHH 841
Query: 587 CREAGVRNLQKQIEKVYRKIALQLVRQGVSNEPAREITLVEPSEQPTGVSIATEVENKSQ 646
RE+GVR L+K +EKVYRKIA +V++ E EP E S TE + S
Sbjct: 842 ARESGVRGLRKLLEKVYRKIAFDIVKE------HGESVFPEPKEGEL-ASAKTEAASASA 894
Query: 647 RDSLAEDVSVHVIPTDFSCEKINVVSLTTKSEVDHYEHPKGVSKETSADDKATPTNTSGK 706
S V P + + + + + + P + E GK
Sbjct: 895 TQS--------VTPPNVDGQAADSAAAPSA-----FPEPSASTSEAPDSKPLQDGKVPGK 941
Query: 707 MEANEHTEEVMEALVDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQT-PVGVVMG 765
A E +V V K V KV + +L ++G V+ +R+Y P GV G
Sbjct: 942 DAAPEPPAKVTTEKRQPMAVPKDV-KVEITIDSLRKYLGPPVYHKDRLYTSAMPAGVSTG 1000
Query: 766 LAWNAMG-GSTLYIETAKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHE----K 820
L + G GS + IET + KG+L +TG+LGDV+KESA IA + ++ + K
Sbjct: 1001 LGYLGNGSGSLMPIETTIMPG---KGSLQLTGKLGDVIKESASIALSWMKTNAFDLGIVK 1057
Query: 821 EPNNTFFTKSKLHLHVPAGATPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGR 880
+ N++ +HLH+P GA K+GPSAG + SL + V LAMTGEV+L G
Sbjct: 1058 DANDSLLENKDVHLHMPEGAIGKEGPSAGVAFTVPLTSLLTNRSVAPTLAMTGEVSLRGM 1117
Query: 881 ILPIGGVKEKTIAARRSGIKTIIFPAANRRDFDELAPN-VKEGLEVHFVDKYSEIYDLAF 939
+LP+GG+KEK +AA R+GI +I PA N+ + + P V + LEVH+V+ + AF
Sbjct: 1118 VLPVGGLKEKLLAAHRAGITKVILPAQNQPNVEADVPKAVLDDLEVHYVNNVWSALNHAF 1177
>Os09g0533400 Peptidase S16, ATP-dependent protease La family protein
Length = 884
Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/368 (45%), Positives = 247/368 (67%), Gaps = 4/368 (1%)
Query: 231 VDHLKVSKRLMLTLELVKRELEITKLQQSIAKAIEEKVTGEQRRYLLNEQLKAIKKELGL 290
+D + + RL ELV R L+ + + I + +E +++ Q+ +LL +Q++AIK+ELG
Sbjct: 235 LDSVDLKVRLSKATELVDRHLQSILVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGD 294
Query: 291 ETDDKTALSEKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTV 350
DD+ ++ RK + P++I + + EL +L+ ++ +S + YL+ L
Sbjct: 295 NDDDEDDVAALERK---MQNAGMPANIWKHAQRELRRLRKMQPQQPGYSSSRTYLELLAE 351
Query: 351 LPWGDYSDEN-FDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPG 409
LPW S+E D+ A+ LD DHYGLT VK+RI+E++AV KL+ ++G ++C GPPG
Sbjct: 352 LPWQKVSEERELDLRAAKESLDRDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPG 411
Query: 410 VGKTSIGRSVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPL 469
VGKTS+ S+A+ALNRKF R S+GG+ D A+I+GHRRTY+G+MPG+++ LK V SNP+
Sbjct: 412 VGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPV 471
Query: 470 VLIDEIDKLGRGYSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIP 529
+L+DEIDK G GDPASALLE+LDPEQN F DHYL+VP DLSKV+FV TAN ++ IP
Sbjct: 472 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIP 531
Query: 530 GPLLDRMEIITIAGYITDEKMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCRE 589
PLLDRME+I + GY +EK+ IA +L E G+ +++ ++ + +IE Y RE
Sbjct: 532 PPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLEQHGLSSTYLQIPEAMVRLIIERYTRE 591
Query: 590 AGVRNLQK 597
AGVRNL++
Sbjct: 592 AGVRNLER 599
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 733 VVVDASNLDNFVGKAVFQPERIYDQTPV-GVVMGLAWNAMGGSTLYIE-TAKVEDGEKKG 790
++VD + L+ +G F D+ GV +GL W + GG ++E TA V KG
Sbjct: 664 MIVDEAMLEKVLGPPRFDDSEAADRVASPGVSVGLVWTSFGGEVQFVEATAMV----GKG 719
Query: 791 ALVVTGQLGDVMKESAQIAHTICRSILHEKEPNNT----FFTKSKLHLHVPAGATPKDGP 846
L +TGQLGDV+KESAQ+A T R+ + + T +H+H PAGA PKDGP
Sbjct: 720 DLHLTGQLGDVIKESAQLALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGP 779
Query: 847 SAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIKTIIFPA 906
SAG T+VTS++SL + V+ D AMTGE+TL G +LP+GGVK+K +AA R GIK +I P
Sbjct: 780 SAGVTLVTSLVSLFSHRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPE 839
Query: 907 ANRRDFDELAPNVKEGLEVHFVDKYSEIYDLAF 939
N +D E+ + GLE+ V + E+ D AF
Sbjct: 840 RNMKDLAEVPAPILSGLEILLVKRIEEVLDHAF 872
>AK119735
Length = 976
Score = 277 bits (708), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 213/361 (59%), Gaps = 55/361 (15%)
Query: 302 FRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTVLPWGDYSDENF 361
+KR+E K + +V + EL +LQ + + +E+ V NYL+ L +PW +++
Sbjct: 378 LKKRLEDAKLSPDAD--KVAQRELQRLQKMNPAQAEYQVCRNYLENLAEIPWTKVTEDQL 435
Query: 362 D---VLRAQRILDEDHYGLTDVKERILEFIAVGKL------------------------- 393
D +++A++ LD+DHYGL +K+R+LE++AV KL
Sbjct: 436 DAGTLVKAKKQLDDDHYGLDKIKKRLLEYLAVLKLKEQANRSIDDQIRALTETPEAEEEA 495
Query: 394 ------------------------RGSSQGKIICLCGPPGVGKTSIGRSVARALNRKFYR 429
R + I+ L GPPGVGKTS+ +SVA AL RKF+R
Sbjct: 496 KEQDVDEKVSREPSEQELRLLERKRMVDKSPILLLVGPPGVGKTSLAKSVATALGRKFHR 555
Query: 430 FSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDKLG-RGYSGDPAS 488
S+GG+ D AEI+GHRRTYV AMPG +V LK VG SNP+ L+DEIDKLG Y+GDP++
Sbjct: 556 ISLGGVRDEAEIRGHRRTYVAAMPGLVVSGLKKVGVSNPVFLLDEIDKLGMSNYNGDPSA 615
Query: 489 ALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVIEMIPGPLLDRMEIITIAGYITDE 548
A+LE+LDPEQN F DHY+++PIDLSKVLF+ TAN ++ IP PLLDRME I ++GY T E
Sbjct: 616 AMLEVLDPEQNHTFTDHYVNIPIDLSKVLFIATANSLDTIPAPLLDRMETIQLSGYTTLE 675
Query: 549 KMHIARDYLEKNTREACGIMPEQVEVTDSALLALIENYCREAGVRNLQKQIEKVYRKIAL 608
K IA +L G+ + + + L +I Y RE+GVRNL+++I V R A+
Sbjct: 676 KRAIASRHLIPKQITTNGLAQDNLTIPTDVLDKIITAYTRESGVRNLEREIGSVCRSKAV 735
Query: 609 Q 609
+
Sbjct: 736 E 736
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 734 VVDASNLDNFVGKAVFQPERIYDQTPVGVVMGL-AWNAMG-GSTLYIETAKVEDGEKKGA 791
+V ++D +G F E + GV+ GL A+++ G GS L+IE A D G
Sbjct: 752 IVTLEDIDATLGIEKFAEELTEQHSRPGVITGLVAYSSGGQGSILFIEIA---DMLGSGR 808
Query: 792 LVVTGQLGDVMKESAQIAHTICRSILHE----KEPNNTFFTKSKLHLHVPAGATPKDGPS 847
+ +TG+LGDV+KES ++A T ++ + + +H+H P+GA PKDGPS
Sbjct: 809 VQLTGKLGDVLKESVEVALTWVKAHAFDLQLTSRVDEDIMKSRSIHVHCPSGAIPKDGPS 868
Query: 848 AGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSGIKTIIFPAA 907
AG +++SL V LAMTGEV+L GR+LP+GG+KEK I A R+G++ ++ P
Sbjct: 869 AGLAHTVALVSLFSSMPVPPTLAMTGEVSLRGRVLPVGGIKEKLIGALRAGVERVLLPEG 928
Query: 908 NRRDFDELAPNVKEGLEVHFVDKYSEIYDLAFP 940
NR+D +L VK+GL++ FV E L +P
Sbjct: 929 NRKDARDLPDEVKQGLKIEFVGWVWEALGLVWP 961
>AK110129
Length = 1140
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 157/219 (71%), Gaps = 2/219 (0%)
Query: 393 LRGSSQGKIICLCGPPGVGKTSIGRSVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAM 452
LR +G I+ L GPPG GKTSI +S+A AL R F R S+GG+ D AEI+GHRRTYVGAM
Sbjct: 653 LRVGDKGPILLLVGPPGTGKTSIAKSLASALQRPFTRLSLGGVRDEAEIRGHRRTYVGAM 712
Query: 453 PGKMVQCLKSVGTSNPLVLIDEIDKLG--RGYSGDPASALLELLDPEQNANFLDHYLDVP 510
PG +V L+ VG S+P++L+DE+DKLG G GDP +A+LE+LDPEQN F DHY++VP
Sbjct: 713 PGSIVSSLRKVGVSDPVILLDEVDKLGSGNGLHGDPMAAMLEVLDPEQNHTFSDHYVNVP 772
Query: 511 IDLSKVLFVCTANVIEMIPGPLLDRMEIITIAGYITDEKMHIARDYLEKNTREACGIMPE 570
IDLS+VLF+ TAN ++ I PLLDR E+I I+GY DEK IAR YL +A G+ P+
Sbjct: 773 IDLSRVLFIATANSLDTISPPLLDRTEVIHISGYTHDEKTAIARQYLLPKQIKAQGLAPD 832
Query: 571 QVEVTDSALLALIENYCREAGVRNLQKQIEKVYRKIALQ 609
Q+ V+D LL + Y REAGVR L+++I + R A++
Sbjct: 833 QLVVSDDVLLKVAMGYTREAGVRTLEREIGALARAKAVE 871
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 139/240 (57%), Gaps = 8/240 (3%)
Query: 705 GKMEANEHTEEVMEALVDEALVDKTVEKVVVDASNLDNFVGKAVFQPERIYDQTPVGVVM 764
+ +A E+++ L D+ K + V+ +A +L+ ++G ++PE GV
Sbjct: 865 ARAKAVEYSQSKKGTLRDDNGQPKQYDPVIREA-DLEKYLGPDTYEPEVAEANARPGVST 923
Query: 765 GLAWNAMG-GSTLYIETAKVEDGEKKGALVVTGQLGDVMKESAQIAHTICRSILHE---K 820
GLA+ G G L+IE+ + G G L +TG LGDV++ESA++A + + +
Sbjct: 924 GLAYQGSGSGGILHIESLLLPPG--SGYLKLTGSLGDVIRESAELALSWVKGNAFQLGIV 981
Query: 821 EPNNTFFTKSKLHLHVPAGATPKDGPSAGCTMVTSMLSLAMGKLVKKDLAMTGEVTLTGR 880
++ F K+ +HLH+P+GA PKDGPSAG M +++SL + LAMTGEVTL G
Sbjct: 982 RTRDSEFPKNDIHLHLPSGAIPKDGPSAGVAMTCALVSLLTKTPISPYLAMTGEVTLRGV 1041
Query: 881 ILPIGGVKEKTIAARRSGIKTIIFPAANRRDFD-ELAPNVKEGLEVHFVDKYSEIYDLAF 939
++P+GG++EK AA R+GI+ ++ P NR+D + +L V++ LE+ +V E + AF
Sbjct: 1042 VMPVGGIREKLTAASRAGIRKVLLPHRNRKDVESDLPKKVRDELEIKYVKTVWEAMEAAF 1101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,306,044
Number of extensions: 1128469
Number of successful extensions: 3633
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3616
Number of HSP's successfully gapped: 11
Length of query: 948
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 838
Effective length of database: 11,292,261
Effective search space: 9462914718
Effective search space used: 9462914718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)