BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0526800 Os09g0526800|AK105121
(268 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0526800 NC domain containing protein 508 e-144
Os08g0546900 NC domain containing protein 410 e-115
Os05g0310600 NC domain containing protein 240 8e-64
Os11g0633100 81 1e-15
>Os09g0526800 NC domain containing protein
Length = 268
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/268 (92%), Positives = 249/268 (92%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXXXXXXXXXX 60
MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEA
Sbjct: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAEGSDSSNSTSS 60
Query: 61 XXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGTCT 120
CPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGTCT
Sbjct: 61 LLLEPSSECPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGTCT 120
Query: 121 IAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSA 180
IAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSA
Sbjct: 121 IAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSA 180
Query: 181 IGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHLGR 240
IGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHLGR
Sbjct: 181 IGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHLGR 240
Query: 241 RLIEDEGSVNVRSEKPKTLLPMKRKRER 268
RLIEDEGSVNVRSEKPKTLLPMKRKRER
Sbjct: 241 RLIEDEGSVNVRSEKPKTLLPMKRKRER 268
>Os08g0546900 NC domain containing protein
Length = 286
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/278 (72%), Positives = 224/278 (80%), Gaps = 11/278 (3%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXX--XXXXXX 58
MGLLS+RVERSE++PGDHIYTWRA Y YSHHGIYVGGSKVVHFTRKKEA
Sbjct: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLDSAIAI 60
Query: 59 XXXXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118
CPTFPDCGFQLPDSGVVLTC+DCFLR GSL+ FEYGVP AVFLAKLRGGT
Sbjct: 61 SSLLSQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT 120
Query: 119 CTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPG-IGTSGQA 177
CT A +DP + VV RAM+LLQNGFG+YD+FENNCEDFALYCKTGLLP +EPG IG SGQA
Sbjct: 121 CTTAAADPPDAVVRRAMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA 180
Query: 178 SSAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSH 237
SSAIGVPLAALLSTP KL AAGPLGMA VTAGMYCAGRYITDIGVRKDV K+EVENLS+H
Sbjct: 181 SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 240
Query: 238 LGRRLIEDEGSVNVRSEKP--------KTLLPMKRKRE 267
LG R + E + ++ ++P K+LLP+KRKR+
Sbjct: 241 LGWRRAKAEEEMAMKKQQPSSHDTKVKKSLLPLKRKRD 278
>Os05g0310600 NC domain containing protein
Length = 281
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRK--KEAXXXXXXXXX 58
+G+LSNRV+R ++ GDHIY+WR Y Y+HHGIY+G + V+HFTR E
Sbjct: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
Query: 59 XXXXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118
P CG + GV+++CLDCFL G+ Y F+Y V A FL K RGGT
Sbjct: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
Query: 119 CTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQAS 178
CT+A SDP+++V+HRA +LL +GFG Y +F+NNCEDFA+YCKTGLL +G SGQ +
Sbjct: 122 CTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQLA 181
Query: 179 SAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHL 238
S + +A+ S+PL+ G+ VT+GMYC GRY++DIGVR+DV K+ VE L H
Sbjct: 182 S-LTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHW 240
Query: 239 GRR 241
R
Sbjct: 241 PPR 243
>Os11g0633100
Length = 156
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 83 GVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGG--TCTIAQSDPSEVVVHRAMYLLQ- 139
GVV CLDCFL + +L F YGVPS + G TC++ DP E V+ RA +L
Sbjct: 42 GVVSCCLDCFLGDDNLCLFAYGVPSWFSASSNIGAQHTCSMDDEDPPETVLRRANEMLAC 101
Query: 140 NGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSAIGVPLAALLS 190
N FG+YD NNC DFA YCKTG + +G A+ P+A S
Sbjct: 102 NDFGSYDTVRNNCFDFAFYCKTGSKNLNRTVLGVVTAPIIAVAEPIAEAFS 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,749,987
Number of extensions: 341012
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)