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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0546900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0343) R2 : 0.0128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.176 (0.0722) R2dN8 : 0.0165 R2N8 : 0.0128
σ : 0.646
deviance : 191.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.23 0.62 3.06 -0.104 0.397 0.378 0.178 1.42 0.27 18 0.9804 1363 -- --
175.46 0.617 3.09 -0.178 0.42 0.742 0.0384 -- 0.275 18.5 0.8989 1030 -- --
174.3 0.615 3.06 -0.108 0.398 0.386 -- 1.38 0.272 18 0.9952 1363 -- --
175.4 0.617 3.09 -0.176 0.409 0.745 -- -- 0.288 18.7 0.8722 1030 -- --
182.22 0.629 3.06 -0.128 -- 0.404 -- 1.39 0.263 -- 0.9992 1336 -- --
183.28 0.635 3.11 0.00846 0.396 -- 0.0828 -- 0.184 18 -- -- -- --
183.3 0.634 3.11 0.0076 0.396 -- -- -- 0.184 18.1 -- -- -- --
184.01 0.632 3.08 -0.18 -- 0.716 -- -- 0.277 -- 0.8448 1030 -- --
176.16 0.618 3.09 -- 0.406 0.677 -- -- 0.295 18.6 0.8 1030 -- --
191.44 0.647 3.11 -0.00377 -- -- -- -- 0.175 -- -- -- -- --
183.3 0.633 3.11 -- 0.396 -- -- -- 0.183 18.1 -- -- -- --
184.73 0.633 3.08 -- -- 0.685 -- -- 0.283 -- 0.7407 1030 -- --
191.44 0.646 3.11 -- -- -- -- -- 0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.13 temperature 20.0 30 > th dose independent rect. 2 1
2 166.15 atmosphere 1015.0 30 < th dose dependent rect. 2 1
3 166.19 temperature 25.0 30 < th dose independent rect. 2 1
4 166.21 humidity 70.0 30 > th dose dependent rect. 2 1
7 166.26 temperature 10.0 30 > th dose dependent rect. 2 1
9 166.29 wind 3.0 30 < th dose independent rect. 2 1
10 166.30 wind 9.0 30 < th dose independent rect. 2 1
11 166.30 temperature 10.0 30 > th dose independent rect. 2 1
14 166.30 humidity 50.0 30 > th dose independent rect. 2 1
17 166.30 humidity 90.0 30 > th dose independent rect. 2 1
18 166.30 atmosphere 995.0 30 > th dose independent rect. 2 1
19 166.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
21 166.30 radiation 1.0 30 < th dose independent rect. 2 1
26 166.30 precipitation 0.1 30 < th dose independent rect. 2 1
27 166.30 temperature 10.0 30 > th dose independent rect. 3 23
28 166.30 radiation 1.0 30 < th dose dependent rect. 2 1
33 166.30 precipitation 0.1 30 < th dose dependent rect. 2 1
38 166.36 wind 9.0 30 < th dose dependent rect. 2 1
44 166.46 atmosphere 995.0 30 > th dose dependent rect. 2 1
49 166.69 temperature 30.0 30 < th dose dependent rect. 2 1
52 166.91 precipitation 0.1 1440 > th dose independent rect. 2 1
53 166.91 precipitation 0.1 1440 > th dose dependent rect. 2 1
58 167.18 wind 1.0 30 > th dose independent rect. 2 1
68 167.66 atmosphere 1000.0 10 > th dose independent rect. 3 23
105 168.18 wind 9.0 1440 < th dose independent rect. 3 1
106 168.18 temperature 10.0 1440 > th dose independent rect. 3 1
109 168.18 temperature 30.0 1440 < th dose independent rect. 3 1
113 168.18 humidity 50.0 1440 > th dose independent rect. 3 1
122 168.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
123 168.18 radiation 1.0 1440 < th dose independent rect. 3 1
143 168.18 temperature 10.0 1440 > th dose independent rect. 4 23
147 168.18 radiation 1.0 1440 < th dose dependent rect. 3 1
165 168.39 precipitation 0.1 1440 < th dose independent rect. 8 2
166 168.39 precipitation 0.1 1440 < th dose dependent rect. 8 2
172 168.62 precipitation 0.1 1440 > th dose independent rect. 8 2
173 168.62 precipitation 0.1 1440 > th dose dependent rect. 8 2
174 168.67 precipitation 0.1 1440 > th dose independent rect. 6 1
176 168.67 precipitation 0.1 1440 > th dose dependent rect. 6 1
185 168.91 precipitation 0.1 30 < th dose independent rect. 3 23
186 168.91 precipitation 0.1 30 < th dose dependent rect. 3 23
202 169.44 radiation 1.0 4320 < th dose independent rect. 6 1
209 169.63 radiation 1.0 4320 > th dose independent rect. 6 1
210 169.63 radiation 40.0 90 > th dose independent rect. 15 1
227 169.63 radiation 40.0 90 > th dose dependent rect. 15 1
270 169.81 precipitation 0.1 1440 < th dose independent rect. 8 4
271 169.81 precipitation 0.1 1440 < th dose dependent rect. 8 4
283 170.16 radiation 10.0 270 < th dose independent rect. 11 12
286 170.30 radiation 20.0 270 < th dose dependent rect. 11 12
287 170.31 wind 1.0 4320 < th dose dependent rect. 5 1
289 170.54 wind 1.0 720 > th dose independent rect. 11 17
295 170.64 radiation 20.0 30 > th dose independent rect. 15 1
299 170.72 precipitation 0.1 1440 < th dose independent rect. 1 2
300 170.72 precipitation 0.1 1440 < th dose dependent rect. 1 2
303 170.77 wind 1.0 10 < th dose independent rect. 6 1
305 170.79 wind 3.0 1440 < th dose dependent rect. 11 1
327 171.00 atmosphere 1005.0 43200 > th dose independent rect. 23 1
341 171.26 radiation 1.0 4320 < th dose dependent rect. 6 1
342 171.26 wind 1.0 270 < th dose dependent rect. 11 2
343 171.27 wind 1.0 270 < th dose independent rect. 11 2
357 171.42 atmosphere 1005.0 43200 < th dose independent rect. 23 3
364 171.49 atmosphere 1005.0 43200 < th dose independent rect. 1 1
370 171.56 humidity 80.0 90 < th dose independent rect. 14 6
373 171.60 atmosphere 1005.0 43200 < th dose independent rect. 23 1
384 171.69 atmosphere 1005.0 43200 > th dose independent rect. 23 4
394 171.74 wind 1.0 720 > th dose independent rect. 19 9
395 171.75 wind 9.0 30 < th dose independent rect. 3 23
396 171.76 atmosphere 1005.0 43200 < th dose independent rect. 11 1
399 171.77 atmosphere 1005.0 43200 > th dose independent rect. 1 1
400 171.77 humidity 90.0 1440 > th dose independent rect. 7 4
403 171.78 humidity 90.0 1440 > th dose dependent rect. 5 8
407 171.79 humidity 90.0 1440 > th dose dependent rect. 10 3
409 171.80 humidity 90.0 1440 < th dose independent rect. 9 4
414 171.81 radiation 10.0 270 < th dose dependent sin 21 NA
416 171.81 radiation 10.0 270 < th dose dependent rect. 3 22
421 171.82 humidity 90.0 1440 > th dose independent rect. 7 6
434 171.83 precipitation 0.1 1440 > th dose independent rect. 6 4
436 171.83 precipitation 0.1 1440 > th dose dependent rect. 6 4
443 171.87 humidity 90.0 1440 > th dose independent rect. 10 3
444 171.87 humidity 90.0 1440 < th dose independent rect. 7 3
446 171.88 atmosphere 1005.0 43200 > th dose independent rect. 11 1
457 171.89 wind 1.0 1440 < th dose independent rect. 11 17
458 171.90 humidity 90.0 1440 < th dose independent rect. 8 1
461 171.91 humidity 90.0 1440 < th dose independent rect. 7 6
467 171.93 humidity 80.0 30 < th dose independent rect. 14 13
502 172.07 humidity 90.0 1440 > th dose independent rect. 5 6
506 172.08 precipitation 0.1 1440 < th dose independent rect. 6 6
508 172.08 precipitation 0.1 1440 < th dose dependent rect. 6 6
511 172.09 humidity 90.0 1440 > th dose independent rect. 5 8
536 172.15 atmosphere 1005.0 43200 > th dose independent rect. 23 13
537 172.15 atmosphere 1005.0 43200 < th dose independent rect. 23 15
572 172.23 atmosphere 1005.0 43200 > th dose independent rect. 1 11
602 172.27 atmosphere 1005.0 43200 > th dose independent sin 9 NA
616 172.29 atmosphere 1005.0 43200 < th dose independent sin 10 NA
622 172.30 radiation 10.0 270 < th dose independent sin 19 NA
642 172.31 atmosphere 1005.0 43200 > th dose independent rect. 18 18
647 172.32 atmosphere 1005.0 43200 < th dose independent rect. 18 18
648 172.32 humidity 90.0 1440 > th dose dependent sin 3 NA
658 172.34 atmosphere 1005.0 43200 < th dose independent rect. 18 13
664 172.35 atmosphere 1005.0 43200 < th dose independent sin 5 NA
680 172.36 wind 1.0 270 < th dose dependent rect. 10 11
764 172.43 wind 1.0 270 < th dose dependent rect. 11 4
785 172.47 wind 1.0 4320 < th dose independent rect. 3 3
889 172.58 wind 1.0 10 > th dose independent rect. 20 18
900 172.59 radiation 1.0 30 < th dose dependent rect. 5 1
946 172.65 temperature 25.0 10 > th dose independent rect. 14 6
947 172.65 atmosphere 1005.0 43200 < th dose independent rect. 7 7