BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0546900 Os08g0546900|J075194E11
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261 294 4e-80
AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264 288 2e-78
AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260 247 6e-66
AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253 216 1e-56
AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284 202 2e-52
AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243 174 5e-44
>AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261
Length = 260
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 176/244 (72%), Gaps = 6/244 (2%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLDXXXXX 60
MGLL++++ER E+KPGDHIYT+RA + YSHHGI+VGGSKVVHF + +D
Sbjct: 1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNP----MDSSTSS 56
Query: 61 XXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT 120
FPDCGF+ PDSGVVL+C+DCFL+ GSL+ FEYGV P+VFL K+RGGT
Sbjct: 57 ISSSSSEDIC-SIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGT 115
Query: 121 CXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA 180
C M+LLQNGFG+YD+F+NNCEDFALYCKTGLL D+ G +GRSGQA
Sbjct: 116 CTTAQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLG-VGRSGQA 174
Query: 181 SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 240
SS +G PLAALLS+PFKLL P+G+A VTAGMYC RY TDIGVR DV+KV VE+L+ +
Sbjct: 175 SSIVGAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALN 234
Query: 241 LGWR 244
L +
Sbjct: 235 LDVK 238
>AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264
Length = 263
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 177/256 (69%), Gaps = 6/256 (2%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGL-----D 55
MG+L+++VER E+KPGDHIYT+RA + YSHHG++VGG KVVHF + + L
Sbjct: 1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60
Query: 56 XXXXXXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAK 115
CPT+PDCG++ P SGVVL+C+DCFL+ GSL+ F+YGV ++FL +
Sbjct: 61 SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120
Query: 116 LRGGTCXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIG 175
RGGTC MHLLQNGFG+Y+VF+NNCEDFALYCKTGLL D+ G +G
Sbjct: 121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNG-VG 179
Query: 176 RSGQASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVE 235
RSGQASS IG PLAALLS+P LL P+G+A VTAGMYC RY TDIGVR DV+KV VE
Sbjct: 180 RSGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPVE 239
Query: 236 NLSAHLGWRRAKAEEE 251
+L+ +LG + K + +
Sbjct: 240 DLALNLGLKPLKRKRK 255
>AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260
Length = 259
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 156/242 (64%), Gaps = 5/242 (2%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRK-KEAGTAGLDXXXX 59
MGLLS+R++RS +KPGDHIY+WR AY Y+HHGIYVG +V+HFTR+ +E GT +
Sbjct: 1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60
Query: 60 XXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGG 119
+ CPT C GVV +C++CFL GG L+ FEY V A FL K RGG
Sbjct: 61 VSSGPSRNHTHCPT---CVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGG 117
Query: 120 TCXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQ 179
TC HLLQNGFG YDVF+NNCEDFA+YCKT LL E ++G+SGQ
Sbjct: 118 TCTLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALL-VLEGRTMGQSGQ 176
Query: 180 ASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSA 239
A S IG P+AA+LSTP +LL GMAA G+YCA RY TDIG+R DV KVE E+L+
Sbjct: 177 AVSIIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTR 236
Query: 240 HL 241
L
Sbjct: 237 RL 238
>AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253
Length = 252
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 155/256 (60%), Gaps = 12/256 (4%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTR--KKEAGTAGLDXXX 58
MG LS+++ R ++KPGDHIY+WR AY Y+HHGIYVG +V HFTR +E GT
Sbjct: 1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60
Query: 59 XXXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRG 118
G C PDCG + GV+ +C++CFL GG L+ FEY V PA+FLAK RG
Sbjct: 61 IVSSSHNHGDNPC---PDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRG 117
Query: 119 GTCXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSG 178
G C LLQNGFG Y+VF+NNCEDFA+YCKTGLL A+ +GRSG
Sbjct: 118 GVCTIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANT--DVGRSG 175
Query: 179 QASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLS 238
QA+S + + LLS+P + + AG G+A GMYC R ++DIG+R DV KV VE L
Sbjct: 176 QAASIV-AAASVLLSSPLRFV-AGFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVERLV 233
Query: 239 AHLGW---RRAKAEEE 251
A + AK E+E
Sbjct: 234 ADVACMSDMEAKPEDE 249
>AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284
Length = 283
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 146/280 (52%), Gaps = 33/280 (11%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKK--EAGTAGLDXXX 58
MGL SH++ R ++KPGDHIY+WR AY YSHHG+YVG KV+HFTR E GT +
Sbjct: 1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60
Query: 59 XXXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRG 118
G + DCG Q GV+ +C+DCFL GG+LH FEY P++FLAK RG
Sbjct: 61 IDISIPNHGRRDKKCI-DCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RG 118
Query: 119 GTCXXXXXX-XXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRS 177
GTC LLQNGFG YD+ +NNCEDFA+YCKTGL G S
Sbjct: 119 GTCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLSVATKFGCS 178
Query: 178 GQASSA------IGVPLAAL----------------------LSTPFKLLAAGPLGMAAV 209
GQA+S + + L L +S+ K + G G+A
Sbjct: 179 GQANSVSAAGGVVALTLKVLGVKKKSSSGHEDDSVVSVVNQFISSTVKYVVPGIGGLALA 238
Query: 210 TAGMYCAGRYITDIGVRKDVVKVEVENLSAHLGWRRAKAE 249
G YC GR DIGVRKD KV VE L A +G ++ E
Sbjct: 239 EYGNYCIGRLFYDIGVRKDACKVSVEELVAFVGAKQNILE 278
>AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243
Length = 242
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAG---LDXX 57
+G +S+++ R ++KPGDHIY+WR AY YSHHGIY+G KV+HFT T LD
Sbjct: 9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68
Query: 58 XXXXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLR 117
+G C +C QL GV+ +C+DCFL GG+++ FEY V PA F+AK R
Sbjct: 69 VVSVIPNHKGDNPC---SNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPR 125
Query: 118 GGTCXXXXXXXXXXXXXXXMH-LLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGR 176
GTC + LL+NGFG Y ENNCEDFA+YCKT LL + +GR
Sbjct: 126 RGTCTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDY-VLGR 184
Query: 177 SGQASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVEN 236
GQASS A LS P G A+ + DIG+RKD +KV VE+
Sbjct: 185 GGQASSVSAAAWLAQLS---------PFGSKAI--------QLFADIGMRKDAIKVPVES 227
Query: 237 L 237
L
Sbjct: 228 L 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,007,375
Number of extensions: 227699
Number of successful extensions: 517
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 6
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)