BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0546900 Os08g0546900|J075194E11
         (286 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0546900  NC domain containing protein                        538   e-153
Os09g0526800  NC domain containing protein                        394   e-110
Os05g0310600  NC domain containing protein                        227   8e-60

>Os08g0546900 NC domain containing protein
          Length = 286

 Score =  538 bits (1385), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/286 (91%), Positives = 261/286 (91%)

Query: 1   MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLDXXXXX 60
           MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLD     
Sbjct: 1   MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLDSAIAI 60

Query: 61  XXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT 120
                QGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT
Sbjct: 61  SSLLSQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT 120

Query: 121 CXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA 180
           C               MHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA
Sbjct: 121 CTTAAADPPDAVVRRAMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA 180

Query: 181 SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 240
           SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH
Sbjct: 181 SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 240

Query: 241 LGWRRAKAEEEMAMKKQQPSSHDTKVKKSLLPLKRKRDNFCEIITS 286
           LGWRRAKAEEEMAMKKQQPSSHDTKVKKSLLPLKRKRDNFCEIITS
Sbjct: 241 LGWRRAKAEEEMAMKKQQPSSHDTKVKKSLLPLKRKRDNFCEIITS 286



>Os09g0526800 NC domain containing protein
          Length = 268

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/278 (71%), Positives = 219/278 (78%), Gaps = 11/278 (3%)

Query: 1   MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKKEAGTAGLDXXXXX 60
           MGLLS+RVERSE++PGDHIYTWRA Y YSHHGIYVGGSKVVHFTRKKEA   G D     
Sbjct: 1   MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEA--EGSDSSNST 58

Query: 61  XXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRGGT 120
                + S ECPTFPDCGFQLPDSGVVLTC+DCFLR GSL+ FEYGVP AVFLAKLRGGT
Sbjct: 59  SSLLLEPSSECPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118

Query: 121 CXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSGQA 180
           C               M+LLQNGFG+YD+FENNCEDFALYCKTGLLP +EPG IG SGQA
Sbjct: 119 CTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPG-IGTSGQA 177

Query: 181 SSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 240
           SSAIGVPLAALLSTP KL AAGPLGMA VTAGMYCAGRYITDIGVRKDV K+EVENLS+H
Sbjct: 178 SSAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSH 237

Query: 241 LGWRRAKAEEEMAMKKQQPSSHDTKVKKSLLPLKRKRD 278
           LG R  + E  + ++ ++P        K+LLP+KRKR+
Sbjct: 238 LGRRLIEDEGSVNVRSEKP--------KTLLPMKRKRE 267



>Os05g0310600 NC domain containing protein
          Length = 281

 Score =  227 bits (578), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 153/243 (62%), Gaps = 8/243 (3%)

Query: 1   MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKK--EAGTAG-LDXX 57
           +G+LS+RV+R ++  GDHIY+WR AY Y+HHGIY+G + V+HFTR    E GT   LD  
Sbjct: 2   VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61

Query: 58  XXXXXXXXQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLR 117
                   +  P C     CG  +   GV+++C+DCFL GG+ + F+Y V PA FL K R
Sbjct: 62  LFSSSPATEEGPPCEK---CGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKAR 118

Query: 118 GGTCXXXXXXXXXXXXXXXMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRS 177
           GGTC                HLL +GFG+Y +F+NNCEDFA+YCKTGLL  +   S+GRS
Sbjct: 119 GGTCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLL-VETAFSVGRS 177

Query: 178 GQASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENL 237
           GQ +S +    +A+ S+P + L     G+  VT+GMYC GRY++DIGVR+DVVKV VE L
Sbjct: 178 GQLAS-LTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERL 236

Query: 238 SAH 240
             H
Sbjct: 237 VEH 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,709,308
Number of extensions: 380087
Number of successful extensions: 779
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)