Os09g0526800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NC domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0526800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NC domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.49 | 0.288 | 10 | -0.762 | 0.362 | -1.48 | -0.449 | -0.559 | 0.0396 | 23 | 23.41 | 3740 | -- | -- |
| 37.71 | 0.286 | 10 | -0.796 | 0.337 | -1.3 | -0.466 | -- | 0.0326 | 22.9 | 26.44 | 3830 | -- | -- |
| 38.29 | 0.288 | 10 | -0.751 | 0.37 | -1.49 | -- | -0.597 | 0.042 | 23.2 | 23.32 | 3820 | -- | -- |
| 38.41 | 0.289 | 10 | -0.804 | 0.359 | -1.34 | -- | -- | 0.0193 | 23.3 | 24.15 | 3732 | -- | -- |
| 45.46 | 0.314 | 10 | -0.824 | -- | -1.34 | -- | 0.258 | 0.0301 | -- | 27.88 | 3769 | -- | -- |
| 65.72 | 0.38 | 9.96 | -0.177 | 0.428 | -- | -0.413 | -- | 0.36 | 23.4 | -- | -- | -- | -- |
| 66.43 | 0.382 | 9.96 | -0.161 | 0.43 | -- | -- | -- | 0.362 | 23.6 | -- | -- | -- | -- |
| 45.51 | 0.314 | 10 | -0.786 | -- | -1.37 | -- | -- | 0.0321 | -- | 27.49 | 3770 | -- | -- |
| 48.86 | 0.326 | 10 | -- | 0.345 | -0.881 | -- | -- | 0.19 | 23 | 27.71 | 2577 | -- | -- |
| 78.03 | 0.413 | 9.95 | -0.149 | -- | -- | -- | -- | 0.366 | -- | -- | -- | -- | -- |
| 67.12 | 0.383 | 9.96 | -- | 0.428 | -- | -- | -- | 0.379 | 23.5 | -- | -- | -- | -- |
| 55.31 | 0.346 | 9.99 | -- | -- | -0.975 | -- | -- | 0.18 | -- | 28.7 | 2376 | -- | -- |
| 78.62 | 0.414 | 9.95 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.17 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 5 | 32.21 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 45 | 32.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 46 | 32.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 47 | 32.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 48 | 32.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 49 | 32.93 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 51 | 32.93 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 62 | 33.03 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 85 | 33.15 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 113 | 33.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 119 | 33.34 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 121 | 33.36 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 122 | 33.37 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 140 | 33.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 153 | 33.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 170 | 33.44 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 174 | 33.45 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 175 | 33.45 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 190 | 33.47 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 198 | 33.48 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 224 | 33.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 256 | 33.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 279 | 33.59 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 284 | 33.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 297 | 33.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 341 | 33.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 345 | 33.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 346 | 33.65 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 350 | 33.66 | radiation | 1.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 359 | 33.66 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 362 | 33.67 | radiation | 1.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 398 | 33.70 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 413 | 33.70 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 495 | 33.76 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 530 | 33.80 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 533 | 33.81 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 557 | 33.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 669 | 33.89 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 689 | 33.91 | atmosphere | 1015.0 | 43200 | < th | dose independent | no | NA | NA |
| 709 | 33.92 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 734 | 33.93 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 797 | 33.98 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 847 | 34.01 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 918 | 34.04 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 920 | 34.04 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 940 | 34.06 | atmosphere | 1015.0 | 43200 | > th | dose independent | no | NA | NA |
| 968 | 34.08 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 990 | 34.09 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 15 | 23 |