BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0526800 Os09g0526800|AK105121
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261 332 9e-92
AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264 318 2e-87
AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260 268 2e-72
AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253 231 4e-61
AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284 203 8e-53
AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243 187 5e-48
>AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261
Length = 260
Score = 332 bits (852), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 157/244 (64%), Positives = 189/244 (77%), Gaps = 3/244 (1%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXXXXXXXXXX 60
MGLL+N++ER E++PGDHIYT+RA++AYSHHGI+VGGSKVVHF +
Sbjct: 1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPMDSSTSSISSS 60
Query: 61 XXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGTCT 120
FPDCGF+ PDSGVVL+CLDCFL+NGSLYCFEYGV +VFL K+RGGTCT
Sbjct: 61 SSEDICS---IFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCT 117
Query: 121 IAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSA 180
AQSD ++ V+HRAMYLLQNGFGNYDIF+NNCEDFALYCKTGLL +++ G+G SGQASS
Sbjct: 118 TAQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASSI 177
Query: 181 IGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHLGR 240
+G PLAALLS+P KL P+G+ATVTAGMYC RY TDIGVR DV K+ VE+L+ +L
Sbjct: 178 VGAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALNLDV 237
Query: 241 RLIE 244
+ IE
Sbjct: 238 KTIE 241
>AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264
Length = 263
Score = 318 bits (814), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/274 (56%), Positives = 193/274 (70%), Gaps = 26/274 (9%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXXXXXXXXXX 60
MG+L+N+VER E++PGDHIYT+RAV+AYSHHG++VGG KVVHF +
Sbjct: 1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60
Query: 61 XXXXXXXX-------CPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAK 113
CPT+PDCG++ P SGVVL+CLDCFL+ GSLY F+YGV S++FL +
Sbjct: 61 SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120
Query: 114 LRGGTCTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGT 173
RGGTCT A SDP + V+HRAM+LLQNGFGNY++F+NNCEDFALYCKTGLL +++ G+G
Sbjct: 121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGVGR 180
Query: 174 SGQASSAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVEN 233
SGQASS IG PLAALLS+PL L P+G+ATVTAGMYC RY TDIGVR DV K+ VE+
Sbjct: 181 SGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPVED 240
Query: 234 LSSHLGRRLIEDEGSVNVRSEKPKTLLPMKRKRE 267
L+ +LG L P+KRKR+
Sbjct: 241 LALNLG-------------------LKPLKRKRK 255
>AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260
Length = 259
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/244 (53%), Positives = 163/244 (66%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXXXXXXXXXX 60
MGLLSNR++RS ++PGDHIY+WR Y Y+HHGIYVG +V+HFTR+ +
Sbjct: 1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60
Query: 61 XXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGTCT 120
P C GVV +CL+CFL G LY FEY V +A FL K RGGTCT
Sbjct: 61 VSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTCT 120
Query: 121 IAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQASSA 180
+A +DP+E+VVHRA +LLQNGFG YD+F+NNCEDFA+YCKT LL +E +G SGQA S
Sbjct: 121 LAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVSI 180
Query: 181 IGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHLGR 240
IG P+AA+LSTP++L GMA G+YCA RY TDIG+R DVAK+E E+L+ L
Sbjct: 181 IGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRLSS 240
Query: 241 RLIE 244
L +
Sbjct: 241 GLFQ 244
>AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253
Length = 252
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/259 (48%), Positives = 163/259 (62%), Gaps = 14/259 (5%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRK--KEAXXXXXXXXX 58
MG LSN++ R +++PGDHIY+WR Y Y+HHGIYVG +V HFTR +E
Sbjct: 1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60
Query: 59 XXXXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118
P PDCG + GV+ +CL+CFL G LY FEY V A+FLAK RGG
Sbjct: 61 IVSSSHNHGDNPC-PDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGV 119
Query: 119 CTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQAS 178
CTIA SDP E V++RA +LLQNGFG Y++F+NNCEDFA+YCKTGLL V +G SGQA+
Sbjct: 120 CTIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLL-VANTDVGRSGQAA 178
Query: 179 SAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHL 238
S + + LLS+PL+ F AG G+A GMYC R ++DIG+R DV+K+ VE
Sbjct: 179 SIV-AAASVLLSSPLR-FVAGFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVE------ 230
Query: 239 GRRLIEDEGSVNVRSEKPK 257
RL+ D ++ KP+
Sbjct: 231 --RLVADVACMSDMEAKPE 247
>AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284
Length = 283
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 149/274 (54%), Gaps = 34/274 (12%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRK---KEAXXXXXXXX 57
MGL S+++ R +++PGDHIY+WR Y YSHHG+YVG KV+HFTR +
Sbjct: 1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60
Query: 58 XXXXXXXXXXXCPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGG 117
DCG Q GV+ +CLDCFL G+L+ FEY ++FLAK RGG
Sbjct: 61 IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RGG 119
Query: 118 TCTIAQSDPSEVVVHRAMYLL-QNGFGNYDIFENNCEDFALYCKTGLLPVE-EPGIGTSG 175
TCTIA SDP + V+ RA +LL QNGFG YD+ +NNCEDFA+YCKTGL + G SG
Sbjct: 120 TCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLSVATKFGCSG 179
Query: 176 QASSA-------------IGVP---------------LAALLSTPLKLFAAGPLGMATVT 207
QA+S +GV + +S+ +K G G+A
Sbjct: 180 QANSVSAAGGVVALTLKVLGVKKKSSSGHEDDSVVSVVNQFISSTVKYVVPGIGGLALAE 239
Query: 208 AGMYCAGRYITDIGVRKDVAKIEVENLSSHLGRR 241
G YC GR DIGVRKD K+ VE L + +G +
Sbjct: 240 YGNYCIGRLFYDIGVRKDACKVSVEELVAFVGAK 273
>AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243
Length = 242
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 133/237 (56%), Gaps = 20/237 (8%)
Query: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAXXXXXXXXXXX 60
+G +SN++ R +++PGDHIY+WR Y YSHHGIY+G KV+HFT
Sbjct: 9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68
Query: 61 XXXXXXXXCPTFP--DCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118
P +C QL GV+ +CLDCFL G++Y FEY V A F+AK R GT
Sbjct: 69 VVSVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGT 128
Query: 119 CTIAQSDPSEVVVHRAMY-LLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQA 177
CTIA SDP + V+ RA Y LL+NGFG+Y ENNCEDFA+YCKT LL ++ +G GQA
Sbjct: 129 CTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDYVLGRGGQA 188
Query: 178 SSAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENL 234
SS A LS P G + + DIG+RKD K+ VE+L
Sbjct: 189 SSVSAAAWLAQLS---------PFGSKAI--------QLFADIGMRKDAIKVPVESL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,584,840
Number of extensions: 216759
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 9
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)