Os05g0310600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NC domain containing protein.
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Os05g0310600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.69 | 0.203 | 12.2 | 0.237 | 0.775 | -0.614 | -0.396 | 0.0268 | 0.167 | 1.18 | 25.79 | 42 | -- | -- |
| 18.69 | 0.201 | 12.2 | 0.241 | 0.775 | -0.616 | -0.39 | -- | 0.167 | 1.18 | 25.8 | 41 | -- | -- |
| 19.18 | 0.204 | 12.2 | 0.299 | 0.777 | -0.623 | -- | -0.268 | 0.181 | 1.19 | 25.79 | 32 | -- | -- |
| 19.31 | 0.205 | 12.2 | 0.254 | 0.778 | -0.621 | -- | -- | 0.168 | 1.19 | 25.81 | 41 | -- | -- |
| 39.99 | 0.295 | 12.2 | 0.225 | -- | -0.815 | -- | 0.0205 | 0.138 | -- | 28.4 | 952 | -- | -- |
| 24.27 | 0.231 | 12.2 | 0.387 | 0.639 | -- | -0.407 | -- | 0.3 | 1.01 | -- | -- | -- | -- |
| 24.96 | 0.234 | 12.2 | 0.402 | 0.64 | -- | -- | -- | 0.302 | 1.01 | -- | -- | -- | -- |
| 39.97 | 0.294 | 12.2 | 0.196 | -- | -0.811 | -- | -- | 0.135 | -- | 28.33 | 954 | -- | -- |
| 20.83 | 0.213 | 12.3 | -- | 0.797 | -0.72 | -- | -- | 0.119 | 1.25 | 25.89 | 62 | -- | -- |
| 50.45 | 0.332 | 12.2 | 0.426 | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
| 29.22 | 0.253 | 12.2 | -- | 0.647 | -- | -- | -- | 0.257 | 1.04 | -- | -- | -- | -- |
| 40.79 | 0.297 | 12.3 | -- | -- | -0.884 | -- | -- | 0.1 | -- | 28.11 | 953 | -- | -- |
| 55.23 | 0.347 | 12.2 | -- | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 2 | 17.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 17.61 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 4 | 17.63 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 40 | 18.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 42 | 18.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 51 | 18.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 53 | 18.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 55 | 18.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 84 | 18.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 94 | 18.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 95 | 18.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 110 | 18.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 117 | 18.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 127 | 18.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 207 | 18.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 275 | 18.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 293 | 18.54 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 326 | 18.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 498 | 18.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 500 | 18.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 508 | 18.81 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 517 | 18.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 518 | 18.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 520 | 18.82 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 525 | 18.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 527 | 18.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 534 | 18.83 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 737 | 19.06 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 855 | 19.23 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |