BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0310600 Os05g0310600|J043001F02
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253 276 9e-75
AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260 273 6e-74
AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284 234 3e-62
AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264 233 6e-62
AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261 229 1e-60
AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243 222 2e-58
>AT3G02700.1 | chr3:581727-582813 REVERSE LENGTH=253
Length = 252
Score = 276 bits (706), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 150/255 (58%), Positives = 176/255 (69%), Gaps = 8/255 (3%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G LSN++ R D+ GDHIYSWR AY+YAHHGIY+G+ V HFTR G E GTGTFLD
Sbjct: 1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60
Query: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
+ SSS + P C CG GVI SCL+CFL GG+ Y+F+Y+VSPA FL K RGG
Sbjct: 61 IVSSSHNHGDNP-CPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGV 119
Query: 122 CTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQLA 181
CT+A+SDP + VI+RA LL +GFG Y++FKNNCEDFAIYCKTGLLV VGRSGQ A
Sbjct: 120 CTIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANT-DVGRSGQAA 178
Query: 182 SLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHWP 241
S+ AA S + SSPLRF+ GGL V GMYC R VSDIG+R DV KVPVERLV
Sbjct: 179 SIVAAASVLLSSPLRFV-AGFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVERLVA--- 234
Query: 242 PRDVAVAPPQESHQE 256
DVA E+ E
Sbjct: 235 --DVACMSDMEAKPE 247
>AT5G06370.1 | chr5:1947299-1948432 REVERSE LENGTH=260
Length = 259
Score = 273 bits (698), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 3/238 (1%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G+LSNR+DR L GDHIYSWRTAY+YAHHGIY+GD VIHFTR G E+GTGT LD+
Sbjct: 1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTR-RGQEVGTGTVLDLI 59
Query: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
L SS P+ C C + GV+ SCL+CFL GG Y F+Y+V+ A FLVKARGGT
Sbjct: 60 LVSSGPSRNH-THCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGT 118
Query: 122 CTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQLA 181
CTLA +DP +IV+HRA+HLL +GFG Y +FKNNCEDFAIYCKT LLV ++G+SGQ
Sbjct: 119 CTLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAV 178
Query: 182 SLTAA-FSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVE 238
S+ +AV S+P+R LTT+ G+ G+YC RY +DIG+R DV KV E L
Sbjct: 179 SIIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTR 236
>AT5G16360.1 | chr5:5355236-5356195 REVERSE LENGTH=284
Length = 283
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/268 (48%), Positives = 158/268 (58%), Gaps = 33/268 (12%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G+ S+++ R DL GDHIYSWR AY+Y+HHG+Y+GD VIHFTR G E GTGT LD
Sbjct: 1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60
Query: 62 LFSSSPA-TEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGG 120
+ S P C CG GVI SCLDCFL GGN +LF+Y+ SP+ FL K RGG
Sbjct: 61 IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RGG 119
Query: 121 TCTLAASDPADIVIHRAQHLL-NSGFGTYSLFKNNCEDFAIYCKTGLLV-ETAFSVGRSG 178
TCT+A+SDP D VI RA+ LL +GFG Y L NNCEDFAIYCKTGL V A G SG
Sbjct: 120 TCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLSVATKFGCSG 179
Query: 179 QLASLTAAFSAVA-----------------------------SSPLRFLTTSAGGLVVVT 209
Q S++AA VA SS ++++ GGL +
Sbjct: 180 QANSVSAAGGVVALTLKVLGVKKKSSSGHEDDSVVSVVNQFISSTVKYVVPGIGGLALAE 239
Query: 210 SGMYCVGRYVSDIGVRRDVVKVPVERLV 237
G YC+GR DIGVR+D KV VE LV
Sbjct: 240 YGNYCIGRLFYDIGVRKDACKVSVEELV 267
>AT4G00905.1 | chr4:387865-389060 FORWARD LENGTH=264
Length = 263
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 168/264 (63%), Gaps = 15/264 (5%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+GVL+N+V+R +L GDHIY++R + Y+HHG+++G V+HF H + + T
Sbjct: 1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPE--HSLISPTLASSS 58
Query: 62 LFSSSPATEEG----PPCEK---CGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFL 114
SSS +E PC CG+ + GV++SCLDCFL G+ Y FDY VS + FL
Sbjct: 59 SSSSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFL 118
Query: 115 VKARGGTCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSV 174
+ RGGTCT A SDP VIHRA HLL +GFG Y++F+NNCEDFA+YCKTGLL+ V
Sbjct: 119 TRFRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGV 178
Query: 175 GRSGQLASLTAA-FSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPV 233
GRSGQ +S+ A +A+ SSPL L + G+ VT+GMYC+ RY +DIGVR DV+KVPV
Sbjct: 179 GRSGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPV 238
Query: 234 ERLVEHWPPRDVAVAPPQESHQEC 257
E L ++ + P + + C
Sbjct: 239 EDLA-----LNLGLKPLKRKRKAC 257
>AT1G01225.1 | chr1:96064-97242 FORWARD LENGTH=261
Length = 260
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 154/236 (65%), Gaps = 6/236 (2%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G+L+N+++R +L GDHIY++R + Y+HHGI++G + V+HF H + +
Sbjct: 1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPE--HNPMDSSTSSIS 58
Query: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
SS P CG GV++SCLDCFL G+ Y F+Y VSP+ FL K RGGT
Sbjct: 59 SSSSEDICSIFP---DCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGT 115
Query: 122 CTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQLA 181
CT A SD D VIHRA +LL +GFG Y +FKNNCEDFA+YCKTGLL+ VGRSGQ +
Sbjct: 116 CTTAQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQAS 175
Query: 182 SLTAA-FSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERL 236
S+ A +A+ SSP + L S G+ VT+GMYC+ RY +DIGVR DV+KV VE L
Sbjct: 176 SIVGAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDL 231
>AT5G16330.1 | chr5:5346163-5346977 REVERSE LENGTH=243
Length = 242
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 152/237 (64%), Gaps = 17/237 (7%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G +SN++ R L GDHIYSWR AY+Y+HHGIYIGD VIHFT G E GTGTFLD
Sbjct: 9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68
Query: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
+ S P + PC C + +GVI SCLDCFL GGN YLF+Y+VSPA F+ K R GT
Sbjct: 69 VVSVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGT 128
Query: 122 CTLAASDPADIVIHRAQH-LLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQL 180
CT+A SDP D VI RA++ LL +GFG Y +NNCEDFAIYCKT LLV + +GR GQ
Sbjct: 129 CTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDYVLGRGGQA 188
Query: 181 ASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLV 237
+S++AA SP G + + +DIG+R+D +KVPVE LV
Sbjct: 189 SSVSAAAWLAQLSPF-------GSKAI---------QLFADIGMRKDAIKVPVESLV 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,608,527
Number of extensions: 284394
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 6
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)