BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0310600 Os05g0310600|J043001F02
(281 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0310600 NC domain containing protein 580 e-166
Os08g0546900 NC domain containing protein 254 6e-68
Os09g0526800 NC domain containing protein 246 1e-65
Os11g0633100 80 2e-15
>Os05g0310600 NC domain containing protein
Length = 281
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MVGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDM 60
MVGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDM
Sbjct: 1 MVGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDM 60
Query: 61 FLFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGG 120
FLFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGG
Sbjct: 61 FLFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGG 120
Query: 121 TCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQL 180
TCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQL
Sbjct: 121 TCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQL 180
Query: 181 ASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHW 240
ASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHW
Sbjct: 181 ASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHW 240
Query: 241 PPRDVAVAPPQESHQECQGNDVAPQECHGDGDGGCVSESLS 281
PPRDVAVAPPQESHQECQGNDVAPQECHGDGDGGCVSESLS
Sbjct: 241 PPRDVAVAPPQESHQECQGNDVAPQECHGDGDGGCVSESLS 281
>Os08g0546900 NC domain containing protein
Length = 286
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 165/242 (68%), Gaps = 6/242 (2%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G+LS+RV+R ++ GDHIY+WR AY Y+HHGIY+G + V+HFTR E GT
Sbjct: 1 MGLLSHRVERSEMKPGDHIYTWRAAYTYSHHGIYVGGSKVVHFTRKK--EAGTAGLDSAI 58
Query: 62 LFSS--SPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARG 119
SS S + E P CG + GV+++C+DCFL GG+ + F+Y V PA FL K RG
Sbjct: 59 AISSLLSQGSPECPTFPDCGFQLPDSGVVLTCVDCFLRGGSLHGFEYGVPPAVFLAKLRG 118
Query: 120 GTCTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLL-VETAFSVGRSG 178
GTCT AA+DP D V+ RA HLL +GFG+Y +F+NNCEDFA+YCKTGLL + S+GRSG
Sbjct: 119 GTCTTAAADPPDAVVRRAMHLLQNGFGSYDVFENNCEDFALYCKTGLLPADEPGSIGRSG 178
Query: 179 QLAS-LTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLV 237
Q +S + +A+ S+P + L G+ VT+GMYC GRY++DIGVR+DVVKV VE L
Sbjct: 179 QASSAIGVPLAALLSTPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLS 238
Query: 238 EH 239
H
Sbjct: 239 AH 240
>Os09g0526800 NC domain containing protein
Length = 268
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 2 VGVLSNRVDRLDLAAGDHIYSWRTAYLYAHHGIYIGDAMVIHFTRATGHEIGTGTFLDMF 61
+G+LSNRV+R ++ GDHIY+WR Y Y+HHGIY+G + V+HFTR E G+ +
Sbjct: 1 MGLLSNRVERSEIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEAE-GSDSSNSTS 59
Query: 62 LFSSSPATEEGPPCEKCGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVSPAFFLVKARGGT 121
P++E P CG + GV+++CLDCFL G+ Y F+Y V A FL K RGGT
Sbjct: 60 SLLLEPSSE-CPTFPDCGFQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLRGGT 118
Query: 122 CTLAASDPADIVIHRAQHLLNSGFGTYSLFKNNCEDFAIYCKTGLLVETAFSVGRSGQLA 181
CT+A SDP+++V+HRA +LL +GFG Y +F+NNCEDFA+YCKTGLL +G SGQ +
Sbjct: 119 CTIAQSDPSEVVVHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLPVEEPGIGTSGQAS 178
Query: 182 S-LTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVEHW 240
S + +A+ S+PL+ G+ VT+GMYC GRY++DIGVR+DV K+ VE L H
Sbjct: 179 SAIGVPLAALLSTPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSHL 238
Query: 241 PPR 243
R
Sbjct: 239 GRR 241
>Os11g0633100
Length = 156
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 52 IGTGTFLDMFLFSSSPATEEGPPCEK--CGHLIKQQGVIMSCLDCFLDGGNPYLFDYAVS 109
+ T + +F F S + C K C ++GV+ CLDCFL N LF Y V
Sbjct: 6 MSTTSLSSLFFFRISSLSSTAQTCRKRECAEAKGKEGVVSCCLDCFLGDDNLCLFAYGV- 64
Query: 110 PAFFLVKARGG---TCTLAASDPADIVIHRAQHLLN-SGFGTYSLFKNNCEDFAIYCKTG 165
P++F + G TC++ DP + V+ RA +L + FG+Y +NNC DFA YCKTG
Sbjct: 65 PSWFSASSNIGAQHTCSMDDEDPPETVLRRANEMLACNDFGSYDTVRNNCFDFAFYCKTG 124
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,143,436
Number of extensions: 505751
Number of successful extensions: 1019
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 4
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)