BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514300 Os09g0514300|Os09g0514300
         (285 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0514300  Conserved hypothetical protein                      562   e-160
Os04g0492400  Conserved hypothetical protein                      343   9e-95
Os09g0359900  Conserved hypothetical protein                      182   4e-46

>Os09g0514300 Conserved hypothetical protein
          Length = 285

 Score =  562 bits (1448), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/285 (95%), Positives = 273/285 (95%)

Query: 1   MGKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGC 60
           MGKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGC
Sbjct: 1   MGKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGC 60

Query: 61  GYGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQ 120
           GYGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQ
Sbjct: 61  GYGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQ 120

Query: 121 LPQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICHETXX 180
           LPQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICHET  
Sbjct: 121 LPQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICHETSS 180

Query: 181 XXXXXXXXXXAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYL 240
                     AWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYL
Sbjct: 181 RRSRKLSGSRAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYL 240

Query: 241 AARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPEREIWKFFFK 285
           AARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPEREIWKFFFK
Sbjct: 241 AARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPEREIWKFFFK 285



>Os04g0492400 Conserved hypothetical protein
          Length = 346

 Score =  343 bits (880), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 163/285 (57%), Positives = 208/285 (72%), Gaps = 5/285 (1%)

Query: 2   GKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGCG 61
           GKVSV D++  S SEV+  K +G LK  ESSI LVN++KNEIRDG L+FR K+VLELGCG
Sbjct: 66  GKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVLELGCG 125

Query: 62  YGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQL 121
            GL GIFACLKGASTVHFQD +AE IRC+ IPNVLANLE A+D+  +   SP+TPSRQ L
Sbjct: 126 SGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTPSRQLL 185

Query: 122 PQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICH-ETXX 180
             ++HFYAG+WEEL T+LSV+      T+    L F EDDF+DGCSS D S+I   +   
Sbjct: 186 APNVHFYAGDWEELPTILSVVHPPAAPTN----LSFSEDDFMDGCSSHDGSSIVGVDNCP 241

Query: 181 XXXXXXXXXXAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYL 240
                     AWER +ET   DGGYD++L++E+PY+ +SL+ LY L+ KCLRPPYGV+Y+
Sbjct: 242 RRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLYV 301

Query: 241 AARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPEREIWKFFFK 285
            ++KN +GS+   RQLR+L++EEG  G H ++E  +REIWKFFFK
Sbjct: 302 VSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK 346



>Os09g0359900 Conserved hypothetical protein
          Length = 312

 Score =  182 bits (461), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 148/289 (51%), Gaps = 60/289 (20%)

Query: 2   GKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGCG 61
           G+ S  D+ G+  S+++  K EG LK  E S+DLV  L ++I++  L    K+VLELGCG
Sbjct: 79  GRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDIKEDRLLLEGKRVLELGCG 138

Query: 62  YGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQL 121
           +GLPGI+A LKGA  VHFQD +AE++RC TIPNV ANL     +     GS         
Sbjct: 139 HGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKESSEEKFTSGS--------- 189

Query: 122 PQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICHETXXX 181
              + F+AG+W E+ ++L                       L G +  D S   H     
Sbjct: 190 ---VGFFAGDWSEIDSLL-----------------------LRGDADLDKSTNSH----- 218

Query: 182 XXXXXXXXXAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYLA 241
                          E  T   GYDI+L+ E  Y+ SSL NLY L+KKCLR P G++Y+A
Sbjct: 219 ---------------ENDTAYNGYDIILMAETVYAVSSLPNLYRLIKKCLRYPGGIVYMA 263

Query: 242 ARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPE-----REIWKFFFK 285
            +K+Y G     R    LV E+GA  + L++E  +     RE+WK  FK
Sbjct: 264 GKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGSSNVREVWKLSFK 312



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,318,223
Number of extensions: 419037
Number of successful extensions: 1068
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 4
Length of query: 285
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 185
Effective length of database: 11,814,401
Effective search space: 2185664185
Effective search space used: 2185664185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)