Os04g0492400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0492400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.35 | 0.25 | 11.9 | -0.761 | 1.62 | -1.41 | -2.23 | 2.66 | -0.101 | 20.8 | 1.368 | 59 | 9.2 | -- |
| 34.73 | 0.274 | 11.9 | -0.613 | 1.64 | -1.45 | 0.498 | -- | -0.0925 | 21.2 | 1.56 | 62 | 8.8 | -- |
| 32.32 | 0.265 | 11.9 | -0.722 | 1.49 | -1.28 | -- | 1.04 | -0.129 | 20.6 | 1.559 | 62 | 9.26 | -- |
| 35.67 | 0.278 | 11.9 | -0.634 | 1.59 | -1.41 | -- | -- | -0.0949 | 20.9 | 1.628 | 64 | 9.12 | -- |
| 52 | 0.336 | 11.9 | -0.726 | -- | -1.16 | -- | 0.79 | -0.146 | -- | 0.0001295 | 787 | 9.63 | -- |
| 53.43 | 0.343 | 11.9 | -0.575 | 0.764 | -- | -1.22 | -- | -0.0596 | 16.4 | -- | -- | -- | -- |
| 57.17 | 0.354 | 11.9 | -0.586 | 0.765 | -- | -- | -- | -0.0662 | 16.8 | -- | -- | -- | -- |
| 50.95 | 0.332 | 11.9 | -0.655 | -- | -1.32 | -- | -- | -0.0831 | -- | 0.009999 | 904 | 11.4 | -- |
| 45.83 | 0.315 | 11.9 | -- | 1.59 | -1.41 | -- | -- | -0.0437 | 20.8 | 3.641 | 78 | 9.31 | -- |
| 88.14 | 0.439 | 11.9 | -0.615 | -- | -- | -- | -- | -0.0861 | -- | -- | -- | -- | -- |
| 66.23 | 0.381 | 11.9 | -- | 0.776 | -- | -- | -- | -0.000948 | 16.7 | -- | -- | -- | -- |
| 63.41 | 0.371 | 11.9 | -- | -- | -1.29 | -- | -- | -0.0792 | -- | 0.2595 | 916 | 11.9 | -- |
| 98.12 | 0.462 | 11.9 | -- | -- | -- | -- | -- | -0.0179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.70 | radiation | 10.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 4 | 29.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 6 | 29.65 | radiation | 1.0 | 30 | < th | dose independent | sin | 15 | NA |
| 7 | 29.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 9 | 29.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 11 | 29.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 12 | 29.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 2 |
| 13 | 29.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 14 | 29.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 22 |
| 15 | 29.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 17 | 29.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 18 | 30.00 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 19 | 30.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 20 | 30.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 21 | 30.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 22 | 30.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 20 |
| 23 | 30.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 24 | 30.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 25 | 30.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 4 |
| 26 | 30.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 27 | 30.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 29 | 30.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 30 | 30.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 31 | 30.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 33 | 30.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 34 | 30.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 35 | 30.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 22 |
| 37 | 30.46 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 41 | 30.54 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 43 | 30.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 49 | 30.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 57 | 30.74 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 60 | 30.81 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 61 | 30.86 | radiation | 1.0 | 30 | > th | dose independent | sin | 16 | NA |
| 69 | 30.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 84 | 31.10 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 18 | 19 |
| 85 | 31.10 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 18 | 19 |
| 92 | 31.18 | wind | 9.0 | 90 | < th | dose independent | rect. | 18 | 19 |
| 93 | 31.21 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 105 | 31.26 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 106 | 31.27 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 19 |
| 112 | 31.29 | temperature | 10.0 | 90 | > th | dose independent | rect. | 18 | 19 |
| 166 | 31.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 168 | 31.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 172 | 31.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 177 | 31.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 194 | 32.19 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 213 | 32.48 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 4 |
| 237 | 32.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 262 | 32.81 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 319 | 33.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 364 | 33.39 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 408 | 33.76 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 443 | 34.12 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 447 | 34.16 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 469 | 34.32 | wind | 9.0 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 473 | 34.35 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 485 | 34.41 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 522 | 34.60 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 540 | 34.70 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 9 |
| 545 | 34.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 559 | 34.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 574 | 34.89 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 640 | 35.10 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 665 | 35.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 666 | 35.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 699 | 35.33 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 7 |
| 715 | 35.38 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 724 | 35.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 726 | 35.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 727 | 35.46 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 728 | 35.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 729 | 35.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 730 | 35.46 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 18 | 19 |
| 734 | 35.47 | wind | 1.0 | 90 | > th | dose independent | rect. | 18 | 19 |
| 738 | 35.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 739 | 35.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 740 | 35.48 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 741 | 35.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 753 | 35.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 761 | 35.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 762 | 35.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 767 | 35.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 768 | 35.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 770 | 35.56 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 784 | 35.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 785 | 35.61 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 786 | 35.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 789 | 35.63 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 790 | 35.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 7 |
| 791 | 35.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 792 | 35.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 795 | 35.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 796 | 35.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 800 | 35.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 804 | 35.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 806 | 35.71 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 813 | 35.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 814 | 35.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 819 | 35.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 15 |
| 820 | 35.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 837 | 35.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 17 |
| 838 | 35.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 848 | 35.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 849 | 35.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 882 | 35.99 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 903 | 36.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 951 | 36.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 14 |
| 952 | 36.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 964 | 36.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 965 | 36.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 966 | 36.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 968 | 36.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 969 | 36.23 | radiation | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 971 | 36.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 976 | 36.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 16 | 20 |