BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0492400 Os04g0492400|AK072530
         (346 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43320.1  | chr2:17996874-17999158 REVERSE LENGTH=352          467   e-132
AT4G14000.1  | chr4:8090851-8092347 FORWARD LENGTH=291            175   3e-44

>AT2G43320.1 | chr2:17996874-17999158 REVERSE LENGTH=352
          Length = 351

 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/352 (64%), Positives = 273/352 (77%), Gaps = 7/352 (1%)

Query: 1   MKTPSLLVQCFPGLLPSKATSCVPIVSERDLQLPSPAVEIIPSKSAHPYKYAGEKVDVQG 60
           M+ PSLL QC PGLLP +    V  +SE+DLQLP+PAVEIIPSK+   ++Y+GE +D  G
Sbjct: 1   MRAPSLLAQCLPGLLP-QDRGGVSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDALG 59

Query: 61  LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL 120
           L +FKGKVSVAD+I  S SE    K +GSLK WESS+ LVN++KNEIRDGQLSFRGKRVL
Sbjct: 60  LQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKRVL 119

Query: 121 ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP 180
           ELGC  G+ GIFACLKGAS+VHFQD +AETIRC  IPNVLANLEQARDRQ+R  ESP+TP
Sbjct: 120 ELGCNFGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPLTP 179

Query: 181 SRQLLAPNVHFYAGDWEELPTILSVV-----HPPAAPTNLSFSEDDFMDGCSSHDGSSIV 235
           SRQ ++ +V FYAG+WEEL T+LS++      P     NLSFSE+DFMDGCSS DGS   
Sbjct: 180 SRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSITG 239

Query: 236 GVDNCPRRSRKLSGSRAWERASETDQ-ADGGYDVILISEVPYAVNSLKKLYALITKCLRP 294
             D   RRSRKLSGSRAWERA+ET Q  + GYDVIL++E+PY++ SLKKLY+LI KCLRP
Sbjct: 240 QPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCLRP 299

Query: 295 PYGVLYVVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK 346
           PYGV+Y+ +KK  VG N GA+ LR L++EE +LG H + E  DR+IWKFF K
Sbjct: 300 PYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351



>AT4G14000.1 | chr4:8090851-8092347 FORWARD LENGTH=291
          Length = 290

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 163/325 (50%), Gaps = 65/325 (20%)

Query: 27  SERDLQLPSPAVEIIPSKSAHPYKYAGEKVDVQGLDIFKGKVSVADMIAFSPSEVVASKY 86
           SE  L  P P VE++  + +    +  +K+ +  + + KG+VS  ++     S++V   Y
Sbjct: 26  SEPALPPPPPPVEVLSFEVSSSTDFEVDKLTIGEITLLKGRVSTKEVFGLPNSDLVPGVY 85

Query: 87  DGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVLELGCGSGLAGIFACLKGASTVHFQDT 146
           +G LK WE SI LV  ++ E + G LSF GKRVLELGCG  L GI+ACLKG+  VHFQD 
Sbjct: 86  EGGLKLWEGSIDLVKALEKESQTGNLSFSGKRVLELGCGHALPGIYACLKGSDAVHFQDF 145

Query: 147 NAETIRCRAIPNVLANLEQARDRQNRPSESPVTPSRQLLAPNVHFYAGDWEELPTILSVV 206
           NAE +RC  IPN+ ANL +     +                 V F+AG+W E+  +L +V
Sbjct: 146 NAEVLRCLTIPNLNANLSEKSSSVSVSETE------------VRFFAGEWSEVHQVLPLV 193

Query: 207 HPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNCPRRSRKLSGSRAWERASETDQADGGY 266
           +                DG                                ET++  GGY
Sbjct: 194 NS---------------DG--------------------------------ETNK-KGGY 205

Query: 267 DVILISEVPYAVNSLKKLYALITKCLRPPYGVLYVVSKKNLVGSNGGARQLRALMEEEGV 326
           D+IL++E  Y++++ K  Y LI +CL  P G +Y+ +KK   G  GG RQ  +++E++G 
Sbjct: 206 DIILMAETIYSISAQKSQYELIKRCLAYPDGAVYMAAKKYYFGVGGGTRQFLSMIEKDGA 265

Query: 327 LGGHFLTELAD-----REIWKFFFK 346
           L    ++++ D     RE+WK  +K
Sbjct: 266 LASTLVSQVTDGSSNVREVWKLSYK 290



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,076,024
Number of extensions: 351080
Number of successful extensions: 885
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 3
Length of query: 346
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 247
Effective length of database: 8,392,385
Effective search space: 2072919095
Effective search space used: 2072919095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)