BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0492400 Os04g0492400|AK072530
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0492400 Conserved hypothetical protein 713 0.0
Os09g0514300 Conserved hypothetical protein 366 e-101
Os09g0359900 Conserved hypothetical protein 195 5e-50
>Os04g0492400 Conserved hypothetical protein
Length = 346
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MKTPSLLVQCFPGLLPSKATSCVPIVSERDLQLPSPAVEIIPSKSAHPYKYAGEKVDVQG 60
MKTPSLLVQCFPGLLPSKATSCVPIVSERDLQLPSPAVEIIPSKSAHPYKYAGEKVDVQG
Sbjct: 1 MKTPSLLVQCFPGLLPSKATSCVPIVSERDLQLPSPAVEIIPSKSAHPYKYAGEKVDVQG 60
Query: 61 LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL 120
LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL
Sbjct: 61 LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL 120
Query: 121 ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP 180
ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP
Sbjct: 121 ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP 180
Query: 181 SRQLLAPNVHFYAGDWEELPTILSVVHPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNC 240
SRQLLAPNVHFYAGDWEELPTILSVVHPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNC
Sbjct: 181 SRQLLAPNVHFYAGDWEELPTILSVVHPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNC 240
Query: 241 PRRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLY 300
PRRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLY
Sbjct: 241 PRRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLY 300
Query: 301 VVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK 346
VVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK
Sbjct: 301 VVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK 346
>Os09g0514300 Conserved hypothetical protein
Length = 285
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/285 (60%), Positives = 218/285 (76%), Gaps = 5/285 (1%)
Query: 66 GKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVLELGCG 125
GKVSV D++ S SEV+ K +G LK ESSI LVN++KNEIRDG L+FR K+VLELGCG
Sbjct: 2 GKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGCG 61
Query: 126 SGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTPSRQLL 185
GL GIFACLKGASTVHFQD +AE IRC+ IPNVLANLE A+D+ + SP+TPSRQ L
Sbjct: 62 YGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQL 121
Query: 186 APNVHFYAGDWEELPTILSVVHPPAAPTN----LSFSEDDFMDGCSSHDGSSIVGVDNCP 241
++HFYAG+WEEL T+LSV+ T+ L F EDDF+DGCSS D S+I +
Sbjct: 122 PQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICH-ETSS 180
Query: 242 RRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLYV 301
RRSRKLSGSRAWER +ET DGGYD++L++E+PY+ +SL+ LY L+ KCLRPPYGV+Y+
Sbjct: 181 RRSRKLSGSRAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYL 240
Query: 302 VSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELADREIWKFFFK 346
++KN +GS+ RQLR+L++EEG G H ++E +REIWKFFFK
Sbjct: 241 AARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPEREIWKFFFK 285
>Os09g0359900 Conserved hypothetical protein
Length = 312
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 152/291 (52%), Gaps = 57/291 (19%)
Query: 61 LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL 120
L I+KG+ S +D+ S++V KY+G LK WE S+ LV + ++I++ +L GKRVL
Sbjct: 74 LSIYKGRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDIKEDRLLLEGKRVL 133
Query: 121 ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP 180
ELGCG GL GI+A LKGA VHFQD NAE +RC IPNV ANL + + S S
Sbjct: 134 ELGCGHGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKESSEEKFTSGS---- 189
Query: 181 SRQLLAPNVHFYAGDWEELPTILSVVHPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNC 240
V F+AGDW E+ ++L + G + D S+
Sbjct: 190 --------VGFFAGDWSEIDSLL-------------------LRGDADLDKST------- 215
Query: 241 PRRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLY 300
+ E D A GYD+IL++E YAV+SL LY LI KCLR P G++Y
Sbjct: 216 --------------NSHENDTAYNGYDIILMAETVYAVSSLPNLYRLIKKCLRYPGGIVY 261
Query: 301 VVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELAD-----REIWKFFFK 346
+ KK+ G GG R L+ E+G + L E+AD RE+WK FK
Sbjct: 262 MAGKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGSSNVREVWKLSFK 312
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,049,944
Number of extensions: 577265
Number of successful extensions: 1428
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1425
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)