Os09g0514300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0514300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.6 | 0.357 | 7.17 | 1.69 | 1.75 | 0.436 | 0.446 | 1.34 | 0.57 | 20.9 | 5.9 | 257 | -- | -- |
| 64.8 | 0.375 | 7.18 | 1.77 | 1.74 | 0.448 | -0.0143 | -- | 0.593 | 20.9 | 5.451 | 251 | -- | -- |
| 58.09 | 0.355 | 7.17 | 1.68 | 1.75 | 0.442 | -- | 1.18 | 0.574 | 20.9 | 5.899 | 264 | -- | -- |
| 64.48 | 0.374 | 7.17 | 1.69 | 1.77 | 0.443 | -- | -- | 0.574 | 21 | 5.55 | 251 | -- | -- |
| 99.1 | 0.464 | 7.05 | 1.05 | -- | 2.22 | -- | 0.34 | 0.208 | -- | 0.5402 | 967 | -- | -- |
| 67.35 | 0.385 | 7.16 | 1.7 | 1.71 | -- | 0.0551 | -- | 0.584 | 19.9 | -- | -- | -- | -- |
| 67.36 | 0.384 | 7.16 | 1.69 | 1.71 | -- | -- | -- | 0.584 | 19.9 | -- | -- | -- | -- |
| 79.24 | 0.415 | 7.15 | 1.43 | -- | 2.45 | -- | -- | 0.434 | -- | 0.3916 | 963 | -- | -- |
| 131.24 | 0.534 | 7.25 | -- | 1.16 | 0.818 | -- | -- | 0.168 | 20.6 | 10.08 | 768 | -- | -- |
| 225.99 | 0.702 | 7.12 | 1.68 | -- | -- | -- | -- | 0.561 | -- | -- | -- | -- | -- |
| 142.99 | 0.559 | 7.21 | -- | 1.7 | -- | -- | -- | 0.395 | 20 | -- | -- | -- | -- |
| 130.21 | 0.531 | 7.17 | -- | -- | 2.72 | -- | -- | 0.294 | -- | 5.164e-07 | 995 | -- | -- |
| 300 | 0.808 | 7.16 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 6 | 53.96 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 29 | 54.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 30 | 54.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 39 | 54.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 45 | 54.86 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 67 | 55.18 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 70 | 55.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 90 | 55.34 | humidity | 60.0 | 720 | > th | dose independent | rect. | 1 | 11 |
| 93 | 55.35 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 100 | 55.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 135 | 55.68 | temperature | 15.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 150 | 55.74 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 195 | 55.92 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 235 | 56.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 259 | 56.10 | wind | 5.0 | 720 | < th | dose independent | rect. | 5 | 5 |
| 281 | 56.17 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 290 | 56.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 344 | 56.38 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 369 | 56.46 | humidity | 60.0 | 720 | > th | dose independent | rect. | 18 | 18 |
| 376 | 56.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 412 | 56.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 425 | 56.60 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 437 | 56.63 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 6 |
| 455 | 56.66 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 461 | 56.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 462 | 56.68 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 482 | 56.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 484 | 56.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 526 | 56.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 528 | 56.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 531 | 56.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 544 | 56.82 | wind | 7.0 | 90 | < th | dose independent | sin | 20 | NA |
| 551 | 56.83 | wind | 9.0 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 584 | 56.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 4 |
| 591 | 56.91 | wind | 9.0 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 618 | 56.95 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 636 | 56.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 20 |
| 643 | 56.98 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 12 |
| 649 | 57.00 | wind | 7.0 | 270 | < th | dose independent | sin | 0 | NA |
| 664 | 57.02 | wind | 9.0 | 720 | < th | dose independent | rect. | 22 | 19 |
| 673 | 57.04 | temperature | 25.0 | 30 | > th | dose independent | rect. | 8 | 10 |
| 682 | 57.05 | wind | 7.0 | 10 | < th | dose independent | sin | 20 | NA |
| 697 | 57.07 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 9 |
| 698 | 57.07 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 12 |
| 702 | 57.07 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 711 | 57.09 | humidity | 60.0 | 720 | > th | dose independent | sin | 5 | NA |
| 745 | 57.12 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 770 | 57.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 781 | 57.16 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 22 |
| 791 | 57.18 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 24 | 15 |
| 794 | 57.18 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 812 | 57.21 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 24 | 6 |
| 816 | 57.21 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 825 | 57.23 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 848 | 57.25 | temperature | 25.0 | 90 | > th | dose independent | sin | 23 | NA |
| 851 | 57.25 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 866 | 57.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 877 | 57.28 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 889 | 57.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 12 |
| 893 | 57.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 908 | 57.31 | temperature | 15.0 | 720 | > th | dose independent | rect. | 21 | 20 |
| 916 | 57.32 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 5 |
| 931 | 57.33 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 958 | 57.36 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 960 | 57.36 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 976 | 57.39 | wind | 1.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 982 | 57.40 | humidity | 60.0 | 10 | > th | dose independent | sin | 6 | NA |
| 985 | 57.40 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 5 |
| 986 | 57.40 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 5 |