BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0507800 Os09g0507800|AK061725
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0507800 60S ribosomal protein L7a 422 e-119
Os08g0326400 60S ribosomal protein L7a 422 e-119
Os01g0924800 Similar to 60S ribosomal protein L7a 353 9e-98
AK108838 272 2e-73
>Os09g0507800 60S ribosomal protein L7a
Length = 258
Score = 422 bits (1086), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/258 (81%), Positives = 211/258 (81%)
Query: 1 MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXX 60
MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWP
Sbjct: 1 MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 60
Query: 61 XXXXXXXXXPPALNQFTRTLDKNLATNLFKMLLKYRPEDXXXXXXXXXXXXXXEAEGKTV 120
PPALNQFTRTLDKNLATNLFKMLLKYRPED EAEGKTV
Sbjct: 61 RILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTV 120
Query: 121 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA
Sbjct: 121 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
Query: 181 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQX 240
RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ
Sbjct: 181 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQA 240
Query: 241 XXXXXXXXXXXXXXQRMT 258
QRMT
Sbjct: 241 KTKAREKLLAKEAAQRMT 258
>Os08g0326400 60S ribosomal protein L7a
Length = 258
Score = 422 bits (1086), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/258 (81%), Positives = 211/258 (81%)
Query: 1 MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXX 60
MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWP
Sbjct: 1 MAPKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 60
Query: 61 XXXXXXXXXPPALNQFTRTLDKNLATNLFKMLLKYRPEDXXXXXXXXXXXXXXEAEGKTV 120
PPALNQFTRTLDKNLATNLFKMLLKYRPED EAEGKTV
Sbjct: 61 RILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTV 120
Query: 121 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA
Sbjct: 121 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
Query: 181 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQX 240
RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ
Sbjct: 181 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQA 240
Query: 241 XXXXXXXXXXXXXXQRMT 258
QRMT
Sbjct: 241 KTKAREKLLAKEAAQRMT 258
>Os01g0924800 Similar to 60S ribosomal protein L7a
Length = 243
Score = 353 bits (905), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 183/259 (70%), Positives = 195/259 (75%), Gaps = 17/259 (6%)
Query: 1 MAPKRGGRAPVPAKKKTEKV-TNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXX 59
MAPKRG +APVPA+KK NPLFEKRPKQFGIGGALPP+KDLHRFV+WP
Sbjct: 1 MAPKRGAKAPVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQ 60
Query: 60 XXXXXXXXXXPPALNQFTRTLDKNLATNLFKMLLKYRPEDXXXXXXXXXXXXXXEAEGKT 119
PPALNQFTRTLDKNL ++L + + EAEGKT
Sbjct: 61 RRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQ----------------AEAEGKT 104
Query: 120 VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179
VEAKKPIVVKYGL+HVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK
Sbjct: 105 VEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 164
Query: 180 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239
ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIK+NFNDKFDEVRKKWGGG+MGSKSQ
Sbjct: 165 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKSQ 224
Query: 240 XXXXXXXXXXXXXXXQRMT 258
QRMT
Sbjct: 225 AKTKAREKLLAKEAAQRMT 243
>AK108838
Length = 260
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 157/239 (65%), Gaps = 4/239 (1%)
Query: 21 TNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALNQF-TRT 79
TNPLFEKRPK FG+GG PK+DL RFVKWP PP LNQF TR
Sbjct: 24 TNPLFEKRPKNFGLGGQPAPKRDLRRFVKWPKYVRLQRQRRVLSMRLKVPPVLNQFVTRA 83
Query: 80 LDKNLATNLFKMLLKYRPEDXXXXXXXXXXXXXXEAEGKTVEAKKPIVVKYGLNHVTYLI 139
LDKN A LFK+LLKYRPED A GK E KKP+VVKYGLNH+T L+
Sbjct: 84 LDKNQAETLFKLLLKYRPEDKKEKAERLKAEADARAAGKEPEKKKPLVVKYGLNHITTLV 143
Query: 140 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTV 199
E KAQLVVIAHDVDPIELVVWLPALC+KM VPYCIVKGKARLG+IVH+K A+ L +T V
Sbjct: 144 EAGKAQLVVIAHDVDPIELVVWLPALCKKMGVPYCIVKGKARLGAIVHQKNAAALAVTGV 203
Query: 200 KNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQXXXXXXXXXXXXXXXQRMT 258
KNED+ EF K++E+ K+ FN+ R +WGGG+MG KSQ QRMT
Sbjct: 204 KNEDQREFGKLVESFKSQFNEG---ARVQWGGGIMGIKSQHKQKQKERILAKELAQRMT 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,200,247
Number of extensions: 253997
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 4
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)