Os01g0924800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L7a.
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Os01g0924800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L7a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.73 | 0.549 | 8.27 | -1.4 | 0.63 | 0.887 | -0.136 | -1.29 | 0.392 | 23 | 19.63 | 1237 | -- | -- |
| 139.15 | 0.549 | 8.27 | -1.42 | 0.593 | 0.951 | 0.11 | -- | 0.387 | 23.2 | 36.73 | 1219 | -- | -- |
| 136.74 | 0.545 | 8.27 | -1.4 | 0.637 | 0.892 | -- | -1.22 | 0.391 | 23 | 19.62 | 1225 | -- | -- |
| 139.17 | 0.549 | 8.28 | -1.43 | 0.59 | 0.964 | -- | -- | 0.38 | 23.2 | 36.79 | 1219 | -- | -- |
| 152.8 | 0.576 | 8.22 | -1.33 | -- | 0.859 | -- | -1.2 | 0.461 | -- | 28.03 | 1763 | -- | -- |
| 163.11 | 0.599 | 8.31 | -1.57 | 0.387 | -- | 0.0562 | -- | 0.179 | 23.2 | -- | -- | -- | -- |
| 163.13 | 0.598 | 8.31 | -1.57 | 0.386 | -- | -- | -- | 0.179 | 23.2 | -- | -- | -- | -- |
| 155.02 | 0.58 | 8.27 | -1.49 | -- | 0.774 | -- | -- | 0.32 | -- | 29.72 | 1732 | -- | -- |
| 190.93 | 0.644 | 8.28 | -- | 0.646 | 0.947 | -- | -- | 0.447 | 23 | 30.39 | 1239 | -- | -- |
| 172.46 | 0.614 | 8.3 | -1.56 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 227.97 | 0.706 | 8.27 | -- | 0.372 | -- | -- | -- | 0.354 | 22.9 | -- | -- | -- | -- |
| 208.9 | 0.673 | 8.22 | -- | -- | 0.979 | -- | -- | 0.539 | -- | 30.38 | 1731 | -- | -- |
| 236.58 | 0.718 | 8.26 | -- | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 3 | 128.42 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 7 | 128.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 9 | 129.02 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 34 | 130.53 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 42 | 130.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 48 | 131.20 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 58 | 131.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 60 | 131.49 | wind | 3.0 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 87 | 132.08 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 92 | 132.16 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 94 | 132.19 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 96 | 132.20 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 107 | 132.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 111 | 132.30 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 112 | 132.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 122 | 132.38 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 123 | 132.38 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 144 | 132.56 | wind | 3.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 155 | 132.65 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 187 | 132.83 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 189 | 132.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 253 | 133.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 279 | 133.40 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 312 | 133.61 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 313 | 133.61 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 318 | 133.64 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 335 | 133.76 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 341 | 133.78 | wind | 3.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 385 | 133.99 | wind | 9.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 406 | 134.07 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 413 | 134.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 420 | 134.13 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 436 | 134.17 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 471 | 134.25 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 494 | 134.30 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 507 | 134.32 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 510 | 134.32 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 514 | 134.33 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 546 | 134.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 549 | 134.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 567 | 134.44 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 608 | 134.53 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 620 | 134.56 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 657 | 134.62 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 707 | 134.70 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 804 | 134.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 808 | 134.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 922 | 135.06 | temperature | 15.0 | 14400 | > th | dose dependent | sin | 21 | NA |
| 958 | 135.12 | wind | 3.0 | 43200 | > th | dose independent | sin | 8 | NA |