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Os08g0326400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 60S ribosomal protein L7a.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.4 (0.0198) R2 : 0.573
β1 : 1.41 (0.0724) R2dD : 0.371 R2D : 0.29
β2 : 0.734 (0.0508) R2dC : 0.197 R2C : 0.166
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.376 (0.0422) R2dN8 : 0.0999 R2N8 : 0.00744
σ : 0.372
deviance : 63.02
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.02 0.349 14.4 0.922 0.742 -0.41 0.454 0.948 0.182 19.6 19.97 4359 -- --
56.58 0.35 14.4 1.12 0.722 -0.461 0.301 -- 0.264 19.6 20 4199 -- --
55.58 0.347 14.4 0.906 0.741 -0.42 -- 0.937 0.18 19.5 19.9 4356 -- --
56.23 0.349 14.4 1.11 0.748 -0.605 -- -- 0.233 19.4 19.8 2890 -- --
84.98 0.429 14.4 0.9 -- -0.391 -- 1.01 0.177 -- 19.9 4706 -- --
62.2 0.37 14.4 1.43 0.732 -- 0.545 -- 0.375 19.7 -- -- -- --
63.02 0.372 14.4 1.41 0.734 -- -- -- 0.376 19.6 -- -- -- --
84.52 0.428 14.4 1.11 -- -0.635 -- -- 0.234 -- 19.42 2108 -- --
61.22 0.364 14.5 -- 0.732 -1.24 -- -- -0.0249 19.5 16.8 47520 -- --
91.94 0.448 14.4 1.4 -- -- -- -- 0.365 -- -- -- -- --
115.77 0.503 14.4 -- 0.723 -- -- -- 0.219 19.7 -- -- -- --
89.92 0.442 14.4 -- -- -1.24 -- -- -0.0339 -- 16.85 47520 -- --
143.95 0.56 14.4 -- -- -- -- -- 0.209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.36 humidity 90.0 10 < th dose independent rect. 2 7
6 50.25 atmosphere 1005.0 10 > th dose dependent rect. 3 6
10 50.78 atmosphere 1000.0 270 > th dose dependent rect. 1 7
13 50.85 temperature 10.0 30 > th dose dependent rect. 9 19
21 51.21 atmosphere 1000.0 270 > th dose dependent rect. 3 4
28 51.40 temperature 10.0 43200 > th dose independent rect. 10 6
59 52.15 wind 3.0 4320 > th dose independent rect. 8 1
61 52.30 wind 3.0 4320 < th dose independent rect. 8 1
74 52.49 temperature 20.0 10 > th dose independent rect. 9 19
79 52.51 wind 1.0 14400 < th dose independent rect. 24 2
81 52.53 wind 1.0 14400 > th dose independent rect. 24 2
87 52.57 wind 5.0 4320 < th dose dependent rect. 8 1
91 52.59 temperature 10.0 10 > th dose dependent rect. 9 6
92 52.60 atmosphere 1005.0 90 > th dose independent rect. 3 6
100 52.67 atmosphere 1005.0 270 > th dose independent rect. 3 4
104 52.75 wind 5.0 270 < th dose independent rect. 3 4
115 52.87 humidity 90.0 10 < th dose dependent rect. 2 7
119 52.90 temperature 10.0 270 > th dose dependent rect. 8 4
121 52.91 temperature 10.0 270 > th dose dependent rect. 9 1
122 52.92 wind 1.0 4320 > th dose dependent rect. 8 1
124 52.93 humidity 50.0 43200 < th dose dependent rect. 8 1
135 52.99 radiation 1.0 30 > th dose dependent rect. 18 15
138 53.02 radiation 1.0 30 > th dose dependent rect. 5 4
151 53.04 wind 1.0 270 > th dose independent rect. 2 6
158 53.08 wind 1.0 270 > th dose independent rect. 3 4
160 53.09 radiation 20.0 1440 < th dose independent rect. 12 1
164 53.10 temperature 20.0 10 > th dose independent rect. 9 21
172 53.14 wind 5.0 270 < th dose independent rect. 2 6
180 53.20 atmosphere 1005.0 270 > th dose independent rect. 4 2
189 53.26 temperature 20.0 270 > th dose independent rect. 20 17
190 53.27 wind 1.0 270 > th dose independent rect. 11 22
194 53.32 wind 1.0 270 > th dose independent rect. 13 19
229 53.43 temperature 10.0 270 > th dose dependent rect. 22 14
248 53.53 precipitation 0.1 270 < th dose independent rect. 3 4
252 53.53 precipitation 0.1 270 < th dose dependent rect. 3 4
263 53.55 temperature 10.0 270 > th dose dependent rect. 20 16
270 53.60 wind 5.0 270 < th dose independent rect. 4 2
272 53.60 temperature 20.0 4320 < th dose dependent rect. 18 1
280 53.63 radiation 20.0 1440 < th dose dependent rect. 11 2
284 53.64 humidity 90.0 10 < th dose independent rect. 14 19
289 53.65 wind 3.0 43200 < th dose dependent rect. 8 1
290 53.66 wind 1.0 30 > th dose independent rect. 4 5
291 53.67 temperature 10.0 1440 > th dose independent rect. 5 5
294 53.67 atmosphere 995.0 1440 > th dose independent rect. 5 5
295 53.67 atmosphere 1015.0 1440 < th dose independent rect. 5 5
296 53.67 wind 1.0 30 > th dose independent rect. 15 18
297 53.67 temperature 10.0 1440 > th dose independent rect. 10 19
314 53.71 radiation 1.0 10 > th dose independent rect. 9 6
330 53.77 precipitation 0.1 10 < th dose independent rect. 15 18
331 53.77 precipitation 0.1 10 < th dose dependent rect. 15 18
340 53.80 precipitation 0.1 30 < th dose independent rect. 9 6
341 53.80 radiation 1.0 30 > th dose independent rect. 18 15
345 53.80 precipitation 0.1 30 < th dose dependent rect. 9 6
348 53.80 wind 1.0 14400 < th dose dependent rect. 16 16
353 53.81 temperature 10.0 30 > th dose independent rect. 9 6
355 53.81 atmosphere 995.0 30 > th dose independent rect. 9 6
356 53.81 atmosphere 1015.0 30 < th dose independent rect. 9 6
357 53.81 temperature 10.0 30 > th dose independent rect. 15 18
361 53.82 temperature 20.0 4320 < th dose independent rect. 16 3
365 53.82 wind 1.0 30 > th dose independent rect. 9 6
366 53.82 temperature 10.0 1440 > th dose independent rect. 10 6
369 53.82 temperature 10.0 1440 > th dose independent rect. 16 18
372 53.82 wind 9.0 270 < th dose independent rect. 7 20
376 53.83 humidity 50.0 30 > th dose independent rect. 9 6
390 53.84 temperature 10.0 270 > th dose independent rect. 3 4
392 53.84 temperature 30.0 270 < th dose independent rect. 3 4
393 53.84 humidity 50.0 270 > th dose independent rect. 3 4
395 53.84 atmosphere 995.0 270 > th dose independent rect. 3 4
396 53.84 atmosphere 1015.0 270 < th dose independent rect. 3 4
397 53.84 radiation 40.0 270 < th dose independent rect. 3 4
398 53.84 precipitation 0.1 270 < th dose independent rect. 2 6
399 53.84 temperature 10.0 270 > th dose independent rect. 7 20
401 53.84 precipitation 0.1 270 < th dose dependent rect. 2 6
408 53.85 humidity 60.0 43200 < th dose dependent rect. 24 8
410 53.86 wind 1.0 14400 > th dose independent rect. 23 5
415 53.87 radiation 1.0 30 > th dose independent rect. 5 4
426 53.87 wind 1.0 14400 > th dose independent rect. 16 15
429 53.88 wind 9.0 14400 < th dose independent rect. 23 5
433 53.88 wind 5.0 4320 < th dose dependent rect. 6 3
435 53.89 wind 1.0 4320 > th dose dependent rect. 6 4
449 53.92 precipitation 0.1 270 < th dose independent rect. 7 20
453 53.92 precipitation 0.1 270 < th dose dependent rect. 7 20
463 53.93 wind 1.0 14400 < th dose dependent rect. 12 19
464 53.94 wind 1.0 14400 > th dose independent sin 12 NA
467 53.94 wind 9.0 10 < th dose independent rect. 9 6
468 53.94 wind 1.0 14400 > th dose independent rect. 16 17
474 53.95 wind 1.0 14400 < th dose independent rect. 16 15
475 53.95 wind 9.0 30 < th dose independent rect. 15 18
476 53.95 wind 9.0 270 < th dose dependent rect. 3 4
481 53.96 precipitation 0.1 30 < th dose independent rect. 4 5
484 53.96 precipitation 0.1 30 < th dose dependent rect. 4 5
488 53.97 wind 1.0 14400 < th dose independent sin 12 NA
505 54.00 temperature 10.0 30 > th dose independent rect. 4 5
508 54.00 humidity 50.0 30 > th dose independent rect. 4 5
510 54.00 atmosphere 995.0 30 > th dose independent rect. 4 5
511 54.00 atmosphere 1015.0 30 < th dose independent rect. 4 5
513 54.00 temperature 10.0 30 > th dose independent rect. 9 19
528 54.01 atmosphere 995.0 30 > th dose independent rect. 9 19
558 54.04 temperature 10.0 30 > th dose dependent rect. 4 5
563 54.05 wind 9.0 30 < th dose independent rect. 9 19
571 54.06 wind 1.0 14400 > th dose independent rect. 19 14
580 54.07 precipitation 0.1 30 < th dose independent rect. 9 19
586 54.07 precipitation 0.1 30 < th dose dependent rect. 9 19
591 54.08 wind 9.0 270 < th dose independent rect. 8 18
602 54.10 radiation 20.0 4320 < th dose independent rect. 17 4
604 54.10 atmosphere 995.0 270 > th dose independent rect. 7 20
611 54.12 temperature 20.0 4320 > th dose independent rect. 16 3
627 54.13 temperature 10.0 270 > th dose independent rect. 2 6
630 54.13 humidity 50.0 270 > th dose independent rect. 2 6
632 54.13 atmosphere 995.0 270 > th dose independent rect. 2 6
633 54.13 atmosphere 1015.0 270 < th dose independent rect. 2 6
634 54.13 temperature 10.0 270 > th dose independent rect. 8 18
638 54.14 radiation 40.0 270 < th dose independent rect. 2 6
650 54.15 humidity 50.0 4320 > th dose independent rect. 5 5
654 54.15 radiation 40.0 270 < th dose dependent rect. 3 4
663 54.17 precipitation 0.1 270 < th dose independent rect. 8 18
667 54.17 precipitation 0.1 270 < th dose dependent rect. 8 18
690 54.19 atmosphere 995.0 30 > th dose independent rect. 15 18
700 54.20 wind 1.0 14400 > th dose independent rect. 12 19
713 54.21 radiation 10.0 4320 > th dose dependent rect. 17 1
736 54.22 humidity 70.0 43200 > th dose independent rect. 24 7
794 54.26 humidity 50.0 30 > th dose independent rect. 9 19
807 54.27 humidity 70.0 43200 < th dose independent rect. 24 7
819 54.27 temperature 15.0 30 > th dose dependent rect. 20 19
825 54.28 wind 1.0 14400 < th dose independent rect. 12 19
841 54.30 humidity 50.0 270 > th dose independent rect. 7 20
847 54.30 wind 1.0 14400 < th dose dependent rect. 3 23
862 54.31 humidity 50.0 43200 < th dose dependent rect. 19 15
881 54.32 temperature 20.0 4320 > th dose independent rect. 14 12
882 54.32 temperature 20.0 4320 < th dose independent rect. 14 12
884 54.32 humidity 50.0 10 > th dose independent rect. 15 18
894 54.33 temperature 20.0 4320 < th dose independent rect. 15 10
898 54.33 radiation 40.0 90 < th dose independent rect. 15 18
943 54.36 precipitation 0.1 270 < th dose independent rect. 10 23
952 54.36 precipitation 0.1 270 < th dose dependent rect. 10 23
986 54.38 wind 5.0 4320 < th dose dependent rect. 3 7