BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0498800 Os09g0498800|AK070571
(425 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0498800 Protein of unknown function DUF246, plant fami... 845 0.0
Os03g0328100 Similar to Axi 1 (Auxin-independent growth pro... 97 2e-20
Os11g0176300 Protein of unknown function DUF246, plant fami... 72 1e-12
>Os09g0498800 Protein of unknown function DUF246, plant family protein
Length = 425
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/425 (96%), Positives = 408/425 (96%)
Query: 1 MAVDPRQVVAGFLTLSMFVMLGNMIKHDHFTPVGAGQEELGLEATGIESNEIKIADTTEM 60
MAVDPRQVVAGFLTLSMFVMLGNMIKHDHFTPVGAGQEELGLEATGIESNEIKIADTTEM
Sbjct: 1 MAVDPRQVVAGFLTLSMFVMLGNMIKHDHFTPVGAGQEELGLEATGIESNEIKIADTTEM 60
Query: 61 TKVNKAGVDLPKETAEEIRPCWSKPRSNVQESKGFVTFSLTMGPEYHISQITDAVVIARY 120
TKVNKAGVDLPKETAEEIRPCWSKPRSNVQESKGFVTFSLTMGPEYHISQITDAVVIARY
Sbjct: 61 TKVNKAGVDLPKETAEEIRPCWSKPRSNVQESKGFVTFSLTMGPEYHISQITDAVVIARY 120
Query: 121 LGATLVLPEIRGNELGKRRKFEDMYDVDKFMTSLDGVVKVVHSLPNAVSSKKPAVVRVPN 180
LGATLVLPEIRGNELGKRRKFEDMYDVDKFMTSLDGVVKVVHSLPNAVSSKKPAVVRVPN
Sbjct: 121 LGATLVLPEIRGNELGKRRKFEDMYDVDKFMTSLDGVVKVVHSLPNAVSSKKPAVVRVPN 180
Query: 181 RVTEEFITGTIEPIFQRNNYLRLATIFSSVSLKQKESGNKDLDSTACLAMFSGLQLKPEF 240
RVTEEFITGTIEPIFQRNNYLRLATIFSSVSLKQKESGNKDLDSTACLAMFSGLQLKPEF
Sbjct: 181 RVTEEFITGTIEPIFQRNNYLRLATIFSSVSLKQKESGNKDLDSTACLAMFSGLQLKPEF 240
Query: 241 SAVAKHMLDKLKEISEKSDGMVIAIDLQTELLEKKICKTNGGARRRGCYYPQEVVHFLKK 300
SAVAKHMLDKLKEISEKSDGMVIAIDLQTELLEKKICKTNGGARRRGCYYPQEVVHFLKK
Sbjct: 241 SAVAKHMLDKLKEISEKSDGMVIAIDLQTELLEKKICKTNGGARRRGCYYPQEVVHFLKK 300
Query: 301 VGFSADTTIYLTETWWHKSLDTLKEAFPNTYTKDDIMPAANKGEFLKSGDSYLARALDLK 360
VGFSADTTIYLTETWWHKSLDTLKEAFPNTYTKDDIMPAANKGEFLKSGDSYLARALDLK
Sbjct: 301 VGFSADTTIYLTETWWHKSLDTLKEAFPNTYTKDDIMPAANKGEFLKSGDSYLARALDLK 360
Query: 361 ICSESDVFVPAIPGLFYGHVAGKRIAAGLTNIIXXXXXXXXXXXXXXXXXTYVSKKSHLA 420
ICSESDVFVPAIPGLFYGHVAGKRIAAGLTNII TYVSKKSHLA
Sbjct: 361 ICSESDVFVPAIPGLFYGHVAGKRIAAGLTNIIVPAPVSSSSALASEFVSTYVSKKSHLA 420
Query: 421 YSCYC 425
YSCYC
Sbjct: 421 YSCYC 425
>Os03g0328100 Similar to Axi 1 (Auxin-independent growth promoter)-like protein
Length = 498
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 142/343 (41%), Gaps = 44/343 (12%)
Query: 85 PRSNVQESKGFVTFSLTMGPEYHISQITDAVVIARYLGATLVLPEIRGNEL-GKRRKFED 143
PR V +S G++ S G + I D V +ARY+ T+V+PE+ F D
Sbjct: 88 PRRRVYKSNGYLLISCNGGLNQMRAAICDMVTVARYMNLTMVVPELDKQSFWADPSDFGD 147
Query: 144 MYDVDKFMTSLDGVVKVVHSLPNAVSSKKPAVVRVPNRVTEEFITGTIEPIFQRNNYLRL 203
++DV+ F+ SL VK++ LP S K P ++ + +E++ I P+ +++ +R
Sbjct: 148 IFDVNHFINSLQDEVKIIRELPQKFSRKVPFSMQPISWSSEKYYLRQILPLVRKHKVVR- 206
Query: 204 ATIFSSVSLKQKESGNK-DLDSTACLAMFSGLQLKPEFSAVAKHMLDKLKEISEKSDGMV 262
FS + +G L C ++ LQ P A+ K M+ L++ +V
Sbjct: 207 ---FSRTDSRLANNGLPLKLQKLRCRVNYNALQFAPSIEALGKKMISALRKT---GSFIV 260
Query: 263 IAIDLQTELLEKKICKTNGGA--------RRRGCY---------------------YPQE 293
+ + + ++L C T+G + R R Y P E
Sbjct: 261 LHLRYEMDMLAFSGC-THGCSDEETAELTRMRYAYPWWKEKEIDSEKKRLEGLCPLTPGE 319
Query: 294 VVHFLKKVGFSADTTIYLTETWWH---KSLDTLKEAFPNTYTKDDIMPAANKGEFLKSGD 350
LK +GF DT IY+ + K L LK FPN K+ ++ A F K
Sbjct: 320 TTLVLKALGFPRDTRIYIASGEIYGGEKRLTELKTEFPNIIRKEMLLSADELRPFQKH-- 377
Query: 351 SYLARALDLKICSESDVFVPAIPGLFYGHVAGKRIAAGLTNII 393
S ALD + SDVF+P+ G V G R G I
Sbjct: 378 STQMAALDYLVSIASDVFIPSNDGNMAKVVEGHRRFMGFHKTI 420
>Os11g0176300 Protein of unknown function DUF246, plant family protein
Length = 559
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%)
Query: 72 KETAEEIRPCWSKP--RSNVQESKGFVTFSLTMGPEYHISQITDAVVIARYLGATLVLPE 129
K++ + PC +K RS + S GF+ G I DAV +A L ATLV P
Sbjct: 118 KKSGKRWAPCITKKLRRSELPPSNGFLIIEANGGLNQQRISICDAVAVASLLNATLVTPA 177
Query: 130 IRGNELGK-RRKFEDMYDVDKFMTSLDGVVKVVHSLP-NAVSSKKPAVVRVPNRVTEEFI 187
N + + KF D++D D F+ SL ++VV LP +A + + +PN T+ F
Sbjct: 178 FHLNSVWRDSSKFGDIFDEDHFIGSLRKYIRVVKKLPEDAFVNFDHNISMIPNMRTKAFS 237
Query: 188 TGT--IEPIFQRNNYLRLATI-FSSVSLKQKESGNKDLDSTACLAMFSGLQLKPEFSAVA 244
+ + ++ + + L L + + S + S ++ + C A + L+ +
Sbjct: 238 SESYYLQKVLPK--LLELGAVRIAPFSNRLAHSVPPNIQALRCFANYEALRFSEPIRMLG 295
Query: 245 KHMLDKLKEISEKSDGMVIAIDLQTE--LLEKKICKTNGGAR 284
+M+D++ ++S + G I++ L+ E +L C +GG R
Sbjct: 296 TNMVDRMIKMSSLTGGKYISVHLRFEEDMLAFSCCIYDGGWR 337
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,966,006
Number of extensions: 511806
Number of successful extensions: 1158
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)