FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0498800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF246, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.74 (0.0781) R2 : 0.575
β1 : -5.77 (0.512) R2dD : 0.892 R2D : -0.099
β2 : 1.2 (0.135) R2dC : 0.0746 R2C : 0.011
β3 : 3.34 (0.238) R2dE : 0.497 R2E : -0.0533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.67 (1.8) R2dD*E : 0.135 R2D*E : -0.542
γ1 : -1.03 (0.155) R2dN8 : 0.107 R2N8 : -0.0814
σ : 0.97
deviance : 433.53
__
_____
C
peak time of C : 16.7
E
wheather : temperature
threshold : 25.94
memory length : 1504
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.98 0.972 5.74 -5.78 1.2 3.34 -1.52 -7.76 -1.03 17 25.9 1511 -- --
452.55 0.991 5.5 -3.86 1.05 2.74 -2.95 -- -0.645 17.5 25.76 1577 -- --
433.53 0.97 5.74 -5.77 1.2 3.34 -- -7.67 -1.03 16.7 25.94 1504 -- --
450.98 0.989 5.48 -3.72 1.25 2.53 -- -- -0.557 16.6 25.81 1498 -- --
486.73 1.03 5.72 -5.79 -- 3.71 -- -8.17 -1.15 -- 25.46 1724 -- --
714.31 1.25 5.44 -2.89 1.17 -- -2.04 -- -0.37 17.3 -- -- -- --
724.44 1.26 5.45 -2.88 1.16 -- -- -- -0.379 17.1 -- -- -- --
512.47 1.05 5.5 -3.81 -- 2.89 -- -- -0.687 -- 25.4 1743 -- --
790.98 1.31 5.34 -- 1.36 1.75 -- -- 0.1 16.6 27.79 1381 -- --
794.82 1.32 5.43 -2.92 -- -- -- -- -0.408 -- -- -- -- --
943.47 1.44 5.37 -- 1.21 -- -- -- -0.058 17 -- -- -- --
865.44 1.37 5.36 -- -- 2.12 -- -- -0.079 -- 26.6 1772 -- --
1020.37 1.49 5.36 -- -- -- -- -- -0.084 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 428.18 temperature 25 1440 > th dose dependent rect. 7 12
3 428.40 temperature 25 1440 > th dose dependent rect. 11 8
4 428.63 temperature 25 1440 > th dose dependent sin 21 NA
71 430.46 temperature 25 1440 > th dose dependent rect. 15 4
105 431.10 temperature 25 1440 > th dose dependent rect. 11 23
172 432.15 temperature 25 1440 > th dose dependent no NA NA
208 433.29 temperature 25 1440 > th dose dependent rect. 15 23
389 458.20 temperature 30 1440 < th dose independent rect. 18 22
398 458.77 temperature 30 1440 < th dose independent rect. 9 7
411 459.61 humidity 60 14400 < th dose independent rect. 17 2
415 459.67 wind 5 43200 > th dose independent rect. 20 1
419 459.93 wind 5 43200 < th dose independent rect. 20 1
422 460.16 temperature 30 1440 < th dose independent rect. 10 15
426 460.22 temperature 30 1440 < th dose independent rect. 10 12
438 460.36 temperature 30 1440 < th dose independent rect. 10 22
461 460.62 temperature 30 1440 < th dose independent rect. 6 10
479 460.79 temperature 30 1440 < th dose independent sin 21 NA
486 460.85 temperature 30 1440 < th dose independent rect. 23 17
501 461.22 temperature 30 1440 < th dose independent rect. 13 23
512 461.69 temperature 30 1440 < th dose independent rect. 6 19
574 461.91 temperature 30 1440 < th dose independent rect. 23 23
585 461.94 temperature 30 1440 < th dose independent no NA NA
590 461.95 temperature 30 1440 < th dose independent rect. 21 23
671 463.68 humidity 70 14400 < th dose dependent rect. 18 1
732 464.62 wind 7 43200 > th dose independent rect. 17 23
733 464.64 wind 5 43200 > th dose dependent rect. 20 1
737 464.79 humidity 60 14400 < th dose independent rect. 17 15
743 464.98 temperature 30 1440 > th dose independent rect. 18 22
744 465.01 wind 7 43200 < th dose independent rect. 17 23
749 465.19 wind 7 43200 > th dose independent rect. 19 21
757 465.36 wind 7 43200 < th dose independent rect. 19 21
788 465.81 temperature 30 1440 > th dose independent rect. 14 22
796 465.96 temperature 30 1440 > th dose independent rect. 9 7
802 466.07 temperature 30 1440 > th dose independent rect. 9 10
855 466.62 temperature 30 1440 > th dose independent sin 19 NA
866 466.93 humidity 60 14400 > th dose independent rect. 17 2
880 467.29 humidity 60 14400 < th dose independent rect. 17 5
901 467.63 temperature 30 1440 > th dose independent no NA NA