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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0328100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Axi 1 (Auxin-independent growth promoter)-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0501) R2 : 0.281
β1 : -0.463 (0.196) R2dD : 0.0141 R2D : 0.0179
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.548) R2dE : 0.0379 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 21.6 (3.78) R2dD*E : 0.116 R2D*E : 0.207
γ1 : -0.455 (0.107) R2dN8 : 0.0338 R2N8 : 0.0225
σ : 0.912
deviance : 383.79
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.8
memory length : 419
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.97
open length of G : 3.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.07 0.896 4.19 -0.448 0.495 2.23 1.42 21 -0.406 21.9 25.8 415 2.98 4.17
379.23 0.907 4.29 -1.07 0.754 4.84 1.34 -- -0.608 21.9 25.72 415 2.45 5.1
371.48 0.898 4.2 -0.527 0.486 2.31 -- 20.4 -0.417 21.4 25.76 416 2.95 4.13
383.03 0.912 4.28 -1.02 0.68 5.05 -- -- -0.587 21.7 25.72 414 2.42 5.15
383.79 0.912 4.19 -0.463 -- 1.81 -- 21.6 -0.455 -- 25.8 419 2.97 3.95
497.21 1.05 4.24 -0.815 0.167 -- 0.856 -- -0.493 23.8 -- -- -- --
500.09 1.05 4.25 -0.847 0.181 -- -- -- -0.494 22.2 -- -- -- --
404.51 0.937 4.26 -0.992 -- 4.7 -- -- -0.55 -- 25.74 415 2.24 5.13
410.26 0.943 4.26 -- 0.666 4.86 -- -- -0.475 21.6 25.7 412 2.37 5.23
502.08 1.05 4.24 -0.844 -- -- -- -- -0.494 -- -- -- -- --
519 1.07 4.23 -- 0.178 -- -- -- -0.4 21.8 -- -- -- --
429.83 0.966 4.23 -- -- 4.86 -- -- -0.44 -- 25.75 415 1.72 5.72
520.88 1.07 4.22 -- -- -- -- -- -0.4 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 408.15 temperature 25 720 > th dose dependent rect. 1 6
3 411.62 temperature 25 4320 > th dose dependent rect. 2 1
4 411.68 temperature 25 720 > th dose dependent rect. 23 9
17 418.44 atmosphere 1000 270 < th dose dependent rect. 5 3
28 421.07 atmosphere 1000 270 < th dose dependent rect. 4 5
38 422.86 atmosphere 1000 10 < th dose dependent rect. 6 4
50 424.19 atmosphere 1000 720 < th dose dependent rect. 22 10
73 426.18 temperature 25 270 > th dose independent rect. 3 5
88 427.92 atmosphere 1000 10 < th dose dependent rect. 4 7
109 429.40 temperature 25 270 > th dose dependent rect. 7 1
122 430.07 atmosphere 995 1440 > th dose independent rect. 4 23
124 430.26 radiation 30 270 > th dose independent rect. 7 1
154 431.33 atmosphere 1000 720 < th dose dependent rect. 23 2
172 432.19 temperature 30 90 > th dose independent rect. 10 1
173 432.21 atmosphere 1000 720 < th dose dependent sin 9 NA
186 432.98 atmosphere 995 1440 > th dose independent sin 2 NA
187 432.98 atmosphere 995 1440 > th dose independent rect. 15 12
189 433.10 atmosphere 995 1440 > th dose independent sin 15 NA
194 433.21 atmosphere 995 1440 > th dose independent rect. 22 23
196 433.28 temperature 25 4320 > th dose independent rect. 2 1
197 433.30 atmosphere 995 1440 > th dose independent rect. 7 23
206 433.53 atmosphere 995 1440 > th dose independent rect. 9 18
209 433.56 atmosphere 995 1440 < th dose independent rect. 14 1
250 433.56 temperature 30 90 > th dose dependent rect. 10 1
251 433.56 atmosphere 995 1440 < th dose dependent rect. 14 1
295 433.61 atmosphere 995 1440 < th dose independent sin 7 NA
336 433.75 atmosphere 995 1440 > th dose independent no NA NA
366 433.79 atmosphere 995 1440 < th dose independent sin 19 NA
368 433.79 atmosphere 995 1440 < th dose independent no NA NA
579 433.79 atmosphere 995 1440 < th dose dependent sin 0 NA
586 433.82 atmosphere 995 1440 < th dose dependent sin 20 NA
588 433.82 atmosphere 995 1440 < th dose dependent no NA NA
811 433.83 atmosphere 995 1440 > th dose independent rect. 13 14
822 433.83 atmosphere 995 1440 < th dose dependent sin 18 NA
847 433.85 atmosphere 995 1440 < th dose dependent sin 15 NA
867 433.99 atmosphere 995 1440 < th dose independent rect. 17 2
911 434.01 atmosphere 995 1440 < th dose dependent rect. 17 2